miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 5' -49.9 NC_006146.1 + 170229 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 170090 0.66 0.998248
Target:  5'- ---gCCGGCGGGaGGgGCcgGC-GCCg -3'
miRNA:   3'- gauaGGCCGCCCaUCaUGuaUGaUGG- -5'
28942 5' -49.9 NC_006146.1 + 169298 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 168366 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 167434 0.68 0.991392
Target:  5'- -gGUCCcggGGCGGGgGGUcgggcggGCAUGCU-CCg -3'
miRNA:   3'- gaUAGG---CCGCCCaUCA-------UGUAUGAuGG- -5'
28942 5' -49.9 NC_006146.1 + 163357 0.73 0.909399
Target:  5'- uUAUCCuGauauguuaGGGUAGUAUAUGCUAUCc -3'
miRNA:   3'- gAUAGGcCg-------CCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163303 0.79 0.616813
Target:  5'- gCUAUCCcaauuuaGGUGGGUAGUGUAUACUAUCc -3'
miRNA:   3'- -GAUAGG-------CCGCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163116 0.67 0.995919
Target:  5'- aCUAUCCuaGCuuucGGUAGcAUAUGCUACCc -3'
miRNA:   3'- -GAUAGGc-CGc---CCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163035 0.68 0.988789
Target:  5'- gCUAUCCuaauuuaGuuGGGUAGUGUAUACUAUCa -3'
miRNA:   3'- -GAUAGG-------CcgCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162957 0.72 0.926928
Target:  5'- gCUAUCUuaauaGCGGGUAGcAUAUACUAUCc -3'
miRNA:   3'- -GAUAGGc----CGCCCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162903 0.74 0.859956
Target:  5'- gCUAUCCuaguacaGCuGGGUAGUAUAUGCUGuCCu -3'
miRNA:   3'- -GAUAGGc------CG-CCCAUCAUGUAUGAU-GG- -5'
28942 5' -49.9 NC_006146.1 + 162796 0.67 0.995161
Target:  5'- gCUAUCCaGauaaguuCGGGUAGcAUAUGCUAUCc -3'
miRNA:   3'- -GAUAGGcC-------GCCCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 161606 0.7 0.977492
Target:  5'- gCUGcCCGGCcGGcAGUAUGUGCUAUCc -3'
miRNA:   3'- -GAUaGGCCGcCCaUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 161557 0.7 0.974952
Target:  5'- ---aCCaGCaaacccuaguuGGGUAGUAUGUACUACCc -3'
miRNA:   3'- gauaGGcCG-----------CCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 161137 0.68 0.993586
Target:  5'- --uUUCGGguuccCGGGUAGgaaGUACUGCCc -3'
miRNA:   3'- gauAGGCC-----GCCCAUCaugUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 158142 0.67 0.996464
Target:  5'- -gGUCCGGCaGGUcacaGGUgggcucaGCGUGC-ACCa -3'
miRNA:   3'- gaUAGGCCGcCCA----UCA-------UGUAUGaUGG- -5'
28942 5' -49.9 NC_006146.1 + 148514 0.69 0.981995
Target:  5'- ---cCCGGggccaGGGUGGagaGCAUGCUGCUg -3'
miRNA:   3'- gauaGGCCg----CCCAUCa--UGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 138272 0.73 0.915493
Target:  5'- gUGUCCacaGGUGGGUGGUACcuggaggugAUGCUAUUg -3'
miRNA:   3'- gAUAGG---CCGCCCAUCAUG---------UAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 137991 0.68 0.989491
Target:  5'- ---cCCGGCGGGguggggGGUGCGcccccagccggacccUGgUGCCa -3'
miRNA:   3'- gauaGGCCGCCCa-----UCAUGU---------------AUgAUGG- -5'
28942 5' -49.9 NC_006146.1 + 137545 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.