miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28942 5' -49.9 NC_006146.1 + 163303 0.79 0.616813
Target:  5'- gCUAUCCcaauuuaGGUGGGUAGUGUAUACUAUCc -3'
miRNA:   3'- -GAUAGG-------CCGCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 18860 0.68 0.992605
Target:  5'- gCUG-CCGGgGuGGUGG-ACGUGCggggGCCu -3'
miRNA:   3'- -GAUaGGCCgC-CCAUCaUGUAUGa---UGG- -5'
28942 5' -49.9 NC_006146.1 + 77314 0.7 0.977492
Target:  5'- ---cCCGGCGGGUcGcGCAUGCccagGCUg -3'
miRNA:   3'- gauaGGCCGCCCAuCaUGUAUGa---UGG- -5'
28942 5' -49.9 NC_006146.1 + 161606 0.7 0.977492
Target:  5'- gCUGcCCGGCcGGcAGUAUGUGCUAUCc -3'
miRNA:   3'- -GAUaGGCCGcCCaUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162957 0.72 0.926928
Target:  5'- gCUAUCUuaauaGCGGGUAGcAUAUACUAUCc -3'
miRNA:   3'- -GAUAGGc----CGCCCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163357 0.73 0.909399
Target:  5'- uUAUCCuGauauguuaGGGUAGUAUAUGCUAUCc -3'
miRNA:   3'- gAUAGGcCg-------CCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162796 0.67 0.995161
Target:  5'- gCUAUCCaGauaaguuCGGGUAGcAUAUGCUAUCc -3'
miRNA:   3'- -GAUAGGcC-------GCCCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 163035 0.68 0.988789
Target:  5'- gCUAUCCuaauuuaGuuGGGUAGUGUAUACUAUCa -3'
miRNA:   3'- -GAUAGG-------CcgCCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 161557 0.7 0.974952
Target:  5'- ---aCCaGCaaacccuaguuGGGUAGUAUGUACUACCc -3'
miRNA:   3'- gauaGGcCG-----------CCCAUCAUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 101830 0.73 0.903055
Target:  5'- -aGUUCGGCGGGgcccgAGcGCucggGCUGCCg -3'
miRNA:   3'- gaUAGGCCGCCCa----UCaUGua--UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 10389 0.75 0.826815
Target:  5'- -gGUCgCGGCucaGGGUGGUGCuGUGCUACa -3'
miRNA:   3'- gaUAG-GCCG---CCCAUCAUG-UAUGAUGg -5'
28942 5' -49.9 NC_006146.1 + 163116 0.67 0.995919
Target:  5'- aCUAUCCuaGCuuucGGUAGcAUAUGCUACCc -3'
miRNA:   3'- -GAUAGGc-CGc---CCAUCaUGUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 162903 0.74 0.859956
Target:  5'- gCUAUCCuaguacaGCuGGGUAGUAUAUGCUGuCCu -3'
miRNA:   3'- -GAUAGGc------CG-CCCAUCAUGUAUGAU-GG- -5'
28942 5' -49.9 NC_006146.1 + 118343 0.69 0.985785
Target:  5'- ---gCCGGCGGGcgcGUgaACAU-CUACCg -3'
miRNA:   3'- gauaGGCCGCCCau-CA--UGUAuGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 57932 0.66 0.998515
Target:  5'- gCUggCCGGCGccgccauGGUGcUGCAUcaccACUGCCa -3'
miRNA:   3'- -GAuaGGCCGC-------CCAUcAUGUA----UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 161137 0.68 0.993586
Target:  5'- --uUUCGGguuccCGGGUAGgaaGUACUGCCc -3'
miRNA:   3'- gauAGGCC-----GCCCAUCaugUAUGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136244 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136151 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 136058 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5'
28942 5' -49.9 NC_006146.1 + 135965 0.74 0.851979
Target:  5'- --cUCCGGCGGGgGGUGgcCGggccGCUGCCg -3'
miRNA:   3'- gauAGGCCGCCCaUCAU--GUa---UGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.