miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28943 5' -55.2 NC_006146.1 + 170350 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 170070 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 169672 0.67 0.905331
Target:  5'- uGgcGGGCGCGCGUGGc--CCGCc--- -3'
miRNA:   3'- -CauUCCGUGCGCACCuacGGCGcaac -5'
28943 5' -55.2 NC_006146.1 + 169419 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 169138 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 168740 0.67 0.905331
Target:  5'- uGgcGGGCGCGCGUGGc--CCGCc--- -3'
miRNA:   3'- -CauUCCGUGCGCACCuacGGCGcaac -5'
28943 5' -55.2 NC_006146.1 + 168487 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 168206 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 167808 0.67 0.905331
Target:  5'- uGgcGGGCGCGCGUGGc--CCGCc--- -3'
miRNA:   3'- -CauUCCGUGCGCACCuacGGCGcaac -5'
28943 5' -55.2 NC_006146.1 + 167555 0.72 0.676226
Target:  5'- -gGAGGcCACGUGUGGAggcccgcggagagGCCGUGUg- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa------------CGGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 167274 0.71 0.720617
Target:  5'- -cGGGGcCGCGCGUGGGgaugGCCgGCGg-- -3'
miRNA:   3'- caUUCC-GUGCGCACCUa---CGG-CGCaac -5'
28943 5' -55.2 NC_006146.1 + 167093 0.66 0.943097
Target:  5'- aGUGAGGgGgGCGUGGccaucccCCGCGUg- -3'
miRNA:   3'- -CAUUCCgUgCGCACCuac----GGCGCAac -5'
28943 5' -55.2 NC_006146.1 + 167072 0.66 0.938422
Target:  5'- gGUAGGGCA-GCGgGGGUGCCcCGccUGg -3'
miRNA:   3'- -CAUUCCGUgCGCaCCUACGGcGCa-AC- -5'
28943 5' -55.2 NC_006146.1 + 156242 0.67 0.885581
Target:  5'- ---cGGC-CGUGgacgGGGUGCCGUGgUUGg -3'
miRNA:   3'- cauuCCGuGCGCa---CCUACGGCGC-AAC- -5'
28943 5' -55.2 NC_006146.1 + 145566 0.73 0.588073
Target:  5'- --cGGGaACGUGUGGAUGCgCGCGUa- -3'
miRNA:   3'- cauUCCgUGCGCACCUACG-GCGCAac -5'
28943 5' -55.2 NC_006146.1 + 136599 0.66 0.928353
Target:  5'- -gAAGGCGCGCuGgccgGGGUcGCCaGCGUc- -3'
miRNA:   3'- caUUCCGUGCG-Ca---CCUA-CGG-CGCAac -5'
28943 5' -55.2 NC_006146.1 + 123161 0.66 0.928353
Target:  5'- -cAGGGCGCGCGaGGAgGCCcCGg-- -3'
miRNA:   3'- caUUCCGUGCGCaCCUaCGGcGCaac -5'
28943 5' -55.2 NC_006146.1 + 120512 0.71 0.740352
Target:  5'- -cGAGGaCGCgagccGCGUGGAUGCgGCGgcGg -3'
miRNA:   3'- caUUCC-GUG-----CGCACCUACGgCGCaaC- -5'
28943 5' -55.2 NC_006146.1 + 113744 0.67 0.905331
Target:  5'- gGUGAGGaAgGCGUGGAaGCgGCGg-- -3'
miRNA:   3'- -CAUUCCgUgCGCACCUaCGgCGCaac -5'
28943 5' -55.2 NC_006146.1 + 110887 0.73 0.608537
Target:  5'- --cGGGCGCagGCGgGGAcgggGCCGCGUUGg -3'
miRNA:   3'- cauUCCGUG--CGCaCCUa---CGGCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.