miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 83638 0.66 0.677808
Target:  5'- uGGUGGcGGGGGCucuGCGgGCCagaccuccaccuuugGGUUGGCc -3'
miRNA:   3'- -UCACCcCUCCCG---UGUgCGG---------------UCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 28392 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 25314 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 146020 0.66 0.682685
Target:  5'- --aGGGGcaggGGGGCagcuccuggcacuGCGCGuCCAGCUGcaGCa -3'
miRNA:   3'- ucaCCCC----UCCCG-------------UGUGC-GGUCGAC--CG- -5'
28944 3' -61.9 NC_006146.1 + 13002 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 16080 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 114961 0.66 0.634615
Target:  5'- -aUGGcGGGGGGCACGCaGC-AGCccacGGCc -3'
miRNA:   3'- ucACC-CCUCCCGUGUG-CGgUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 106797 0.66 0.634615
Target:  5'- aAG-GGGGA-GGCACGCGagaauUCAGCcacacUGGCa -3'
miRNA:   3'- -UCaCCCCUcCCGUGUGC-----GGUCG-----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 2481 0.66 0.673899
Target:  5'- uGUGGccGGcGGGgGCAgG-CAGCUGGCc -3'
miRNA:   3'- uCACC--CCuCCCgUGUgCgGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 3264 0.66 0.664106
Target:  5'- -cUGGGGAcGGCGCAgGCCAcgaGCcGGg -3'
miRNA:   3'- ucACCCCUcCCGUGUgCGGU---CGaCCg -5'
28944 3' -61.9 NC_006146.1 + 22236 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 51570 0.66 0.651341
Target:  5'- gGGUGGGGAGgcGGCGCG-GCCgaaggggggacugaGGCcGGUu -3'
miRNA:   3'- -UCACCCCUC--CCGUGUgCGG--------------UCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 70486 0.66 0.68366
Target:  5'- cGUGGaGAgugucaGGGCGCGgGUCAGCUcGGUu -3'
miRNA:   3'- uCACCcCU------CCCGUGUgCGGUCGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 19158 0.66 0.664106
Target:  5'- gAGUGGaGGGGGaucGCcCGgGUCucuGCUGGCa -3'
miRNA:   3'- -UCACC-CCUCC---CGuGUgCGGu--CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 168662 0.66 0.638552
Target:  5'- cGGUGGGGccugagGGGGCGCGgcgauugucgcCGCCcucccucugcucccGUUGGCg -3'
miRNA:   3'- -UCACCCC------UCCCGUGU-----------GCGGu-------------CGACCG- -5'
28944 3' -61.9 NC_006146.1 + 151400 0.66 0.673899
Target:  5'- cAGgcgGGGGAuGGCGCgGCGgCAGCUGu- -3'
miRNA:   3'- -UCa--CCCCUcCCGUG-UGCgGUCGACcg -5'
28944 3' -61.9 NC_006146.1 + 92251 0.66 0.644457
Target:  5'- uGUGGcugcugcuGGGGGGCGgGC-CCGGCcuggGGCu -3'
miRNA:   3'- uCACC--------CCUCCCGUgUGcGGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 79632 0.66 0.673899
Target:  5'- --cGGGGAcaGGGuCACAgGCCGGC-GaGCc -3'
miRNA:   3'- ucaCCCCU--CCC-GUGUgCGGUCGaC-CG- -5'
28944 3' -61.9 NC_006146.1 + 62454 0.66 0.634615
Target:  5'- uAGUGGaccuugguacGGAcGGGCACuGCGuCCAcCUGGCc -3'
miRNA:   3'- -UCACC----------CCU-CCCGUG-UGC-GGUcGACCG- -5'
28944 3' -61.9 NC_006146.1 + 48334 0.66 0.644457
Target:  5'- cGGUGGuGGGccaGGCGuccaguCugGCCAGCgGGCc -3'
miRNA:   3'- -UCACC-CCUc--CCGU------GugCGGUCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.