miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 10735 1.1 0.000794
Target:  5'- aAGUGGGGAGGGCACACGCCAGCUGGCc -3'
miRNA:   3'- -UCACCCCUCCCGUGUGCGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 14041 0.8 0.093486
Target:  5'- cAGgcgGGGGcAGGcGCAaGCGCCGGCUGGCu -3'
miRNA:   3'- -UCa--CCCC-UCC-CGUgUGCGGUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 103381 0.78 0.136382
Target:  5'- cGUGGGGgagauAGGGCGCcUGCCAGUggggGGCg -3'
miRNA:   3'- uCACCCC-----UCCCGUGuGCGGUCGa---CCG- -5'
28944 3' -61.9 NC_006146.1 + 71424 0.76 0.178651
Target:  5'- cGUGGGaAGGGCGCG-GCCGGCauuuUGGCa -3'
miRNA:   3'- uCACCCcUCCCGUGUgCGGUCG----ACCG- -5'
28944 3' -61.9 NC_006146.1 + 126729 0.76 0.196712
Target:  5'- --aGGcuGGAGGGCAC-CGCCAGUUGuGCg -3'
miRNA:   3'- ucaCC--CCUCCCGUGuGCGGUCGAC-CG- -5'
28944 3' -61.9 NC_006146.1 + 3789 0.75 0.206327
Target:  5'- gGGgggGGGGGGGGgGCACGCgGGggaUGGCc -3'
miRNA:   3'- -UCa--CCCCUCCCgUGUGCGgUCg--ACCG- -5'
28944 3' -61.9 NC_006146.1 + 151551 0.74 0.232154
Target:  5'- gGGUGGGaGAGGGUgauuuugugauAgACGCCGGcCUGGUu -3'
miRNA:   3'- -UCACCC-CUCCCG-----------UgUGCGGUC-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 9461 0.73 0.279079
Target:  5'- cGGUGGGcGcGGGGUcCGCGCCcuCUGGCa -3'
miRNA:   3'- -UCACCC-C-UCCCGuGUGCGGucGACCG- -5'
28944 3' -61.9 NC_006146.1 + 154674 0.73 0.279079
Target:  5'- uGGUGGcGGGGGGCGCugcUGCUGGgUGGUc -3'
miRNA:   3'- -UCACC-CCUCCCGUGu--GCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 138308 0.73 0.291932
Target:  5'- uGUGGGuGAGaGGCGCGugaacUGCaAGCUGGCg -3'
miRNA:   3'- uCACCC-CUC-CCGUGU-----GCGgUCGACCG- -5'
28944 3' -61.9 NC_006146.1 + 95740 0.73 0.305244
Target:  5'- cAGUGGGGGGGGCugGUGUUGGCcccGGUu -3'
miRNA:   3'- -UCACCCCUCCCGugUGCGGUCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 51888 0.72 0.312072
Target:  5'- --aGGGGAGGGUggagGCuGCGUCGGCgggGGCc -3'
miRNA:   3'- ucaCCCCUCCCG----UG-UGCGGUCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 147457 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 144379 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 141301 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 153613 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 150535 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 156690 0.71 0.355461
Target:  5'- cGGcUGGGGGucGGGCugGCcuGCCAGggGGCa -3'
miRNA:   3'- -UC-ACCCCU--CCCGugUG--CGGUCgaCCG- -5'
28944 3' -61.9 NC_006146.1 + 18946 0.71 0.363093
Target:  5'- --cGGGaAGGGCAUgugguGCGCCAGC-GGCc -3'
miRNA:   3'- ucaCCCcUCCCGUG-----UGCGGUCGaCCG- -5'
28944 3' -61.9 NC_006146.1 + 157845 0.71 0.370839
Target:  5'- --aGGGGAcGGGCACcgaGCGCCGcCUGGa -3'
miRNA:   3'- ucaCCCCU-CCCGUG---UGCGGUcGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.