miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 3' -61.9 NC_006146.1 + 99165 0.69 0.454217
Target:  5'- aGGUGGcGGAGGGCcaGCuCGuagagccaCCAGgUGGCg -3'
miRNA:   3'- -UCACC-CCUCCCG--UGuGC--------GGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 33277 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 33399 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccgccuGGGCACcgcuGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 104838 0.7 0.419618
Target:  5'- -aUGGGGAGGuGgucacaGCGCGUCAGCUccuccGGCa -3'
miRNA:   3'- ucACCCCUCC-Cg-----UGUGCGGUCGA-----CCG- -5'
28944 3' -61.9 NC_006146.1 + 149972 0.7 0.428119
Target:  5'- gAGUGGGGgccAGGGCcuGCAgGUCGGCcGGa -3'
miRNA:   3'- -UCACCCC---UCCCG--UGUgCGGUCGaCCg -5'
28944 3' -61.9 NC_006146.1 + 167263 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 168195 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 169127 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 170059 0.7 0.436721
Target:  5'- --cGGGGAGGGCccggggccGCGCGUgGGgaUGGCc -3'
miRNA:   3'- ucaCCCCUCCCG--------UGUGCGgUCg-ACCG- -5'
28944 3' -61.9 NC_006146.1 + 33153 0.7 0.41122
Target:  5'- gGGUGGGGGguggcccggcuGGGCACcgccGCGCCGccGCUcGGUc -3'
miRNA:   3'- -UCACCCCU-----------CCCGUG----UGCGGU--CGA-CCG- -5'
28944 3' -61.9 NC_006146.1 + 170304 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 169373 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 126729 0.76 0.196712
Target:  5'- --aGGcuGGAGGGCAC-CGCCAGUUGuGCg -3'
miRNA:   3'- ucaCC--CCUCCCGUGuGCGGUCGAC-CG- -5'
28944 3' -61.9 NC_006146.1 + 151551 0.74 0.232154
Target:  5'- gGGUGGGaGAGGGUgauuuugugauAgACGCCGGcCUGGUu -3'
miRNA:   3'- -UCACCC-CUCCCG-----------UgUGCGGUC-GACCG- -5'
28944 3' -61.9 NC_006146.1 + 154674 0.73 0.279079
Target:  5'- uGGUGGcGGGGGGCGCugcUGCUGGgUGGUc -3'
miRNA:   3'- -UCACC-CCUCCCGUGu--GCGGUCgACCG- -5'
28944 3' -61.9 NC_006146.1 + 51888 0.72 0.312072
Target:  5'- --aGGGGAGGGUggagGCuGCGUCGGCgggGGCc -3'
miRNA:   3'- ucaCCCCUCCCG----UG-UGCGGUCGa--CCG- -5'
28944 3' -61.9 NC_006146.1 + 157845 0.71 0.370839
Target:  5'- --aGGGGAcGGGCACcgaGCGCCGcCUGGa -3'
miRNA:   3'- ucaCCCCU-CCCGUG---UGCGGUcGACCg -5'
28944 3' -61.9 NC_006146.1 + 145247 0.71 0.394741
Target:  5'- uGGUGGGGuGGG-ACACGaCCAGCgccGUg -3'
miRNA:   3'- -UCACCCCuCCCgUGUGC-GGUCGac-CG- -5'
28944 3' -61.9 NC_006146.1 + 167509 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5'
28944 3' -61.9 NC_006146.1 + 168441 0.7 0.402927
Target:  5'- gAG-GGGGcAGGGCugGCGCCGGgccGCg -3'
miRNA:   3'- -UCaCCCC-UCCCGugUGCGGUCgacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.