miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 141668 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 147823 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 158052 0.66 0.792332
Target:  5'- cCAGCCUcgccccaggcGCCuccucGGGUCCgGCCGCCgGa- -3'
miRNA:   3'- -GUCGGA----------CGGu----UUCAGG-CGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 117139 0.66 0.792332
Target:  5'- cCGGCgaGaCCuccGcCCGCCGCCCGUc -3'
miRNA:   3'- -GUCGgaC-GGuuuCaGGCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 131087 0.66 0.792332
Target:  5'- aGGCCgccggGCCGucaacGG-CCGCCGuCCCAg- -3'
miRNA:   3'- gUCGGa----CGGUu----UCaGGCGGC-GGGUaa -5'
28944 5' -58.9 NC_006146.1 + 99088 0.66 0.792332
Target:  5'- gGGCCcgcaGCC-AGGUCCGCaCGuCCCGc- -3'
miRNA:   3'- gUCGGa---CGGuUUCAGGCG-GC-GGGUaa -5'
28944 5' -58.9 NC_006146.1 + 115136 0.66 0.792332
Target:  5'- uGGCCucgcUGCCccuGGcCCGCCGCCgGg- -3'
miRNA:   3'- gUCGG----ACGGuu-UCaGGCGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 144745 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 106745 0.66 0.792332
Target:  5'- cCAGCCUGgCAGAcUCCGagGCCCu-- -3'
miRNA:   3'- -GUCGGACgGUUUcAGGCggCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 157057 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 150901 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 153979 0.66 0.792332
Target:  5'- gGGCC-GCCGGGGUCCcuCCGgCCGg- -3'
miRNA:   3'- gUCGGaCGGUUUCAGGc-GGCgGGUaa -5'
28944 5' -58.9 NC_006146.1 + 52821 0.66 0.783236
Target:  5'- aGGCCgUGCCcaggaugcgGAGGgccgagccgCCGCCGCCCc-- -3'
miRNA:   3'- gUCGG-ACGG---------UUUCa--------GGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 142663 0.66 0.783236
Target:  5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3'
miRNA:   3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 148818 0.66 0.783236
Target:  5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3'
miRNA:   3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 137788 0.66 0.783236
Target:  5'- gGGCCUgguccGCCGgauccgcuucggGGGUCCGCCgGUCCGg- -3'
miRNA:   3'- gUCGGA-----CGGU------------UUCAGGCGG-CGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 151896 0.66 0.783236
Target:  5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3'
miRNA:   3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 145740 0.66 0.783236
Target:  5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3'
miRNA:   3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 154974 0.66 0.783236
Target:  5'- cCAGCCUcgcccaggcGCCuccucGGGUCCgGCCGCCgGa- -3'
miRNA:   3'- -GUCGGA---------CGGu----UUCAGG-CGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 121354 0.66 0.774006
Target:  5'- gGGCCUgGCCGGcguGGccUCCGCC-CCCAg- -3'
miRNA:   3'- gUCGGA-CGGUU---UC--AGGCGGcGGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.