miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 121354 0.66 0.774006
Target:  5'- gGGCCUgGCCGGcguGGccUCCGCC-CCCAg- -3'
miRNA:   3'- gUCGGA-CGGUU---UC--AGGCGGcGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 104402 0.66 0.76465
Target:  5'- aGGCCgUGCCAAAaUCCGUCaGCaCCAg- -3'
miRNA:   3'- gUCGG-ACGGUUUcAGGCGG-CG-GGUaa -5'
28944 5' -58.9 NC_006146.1 + 43320 0.66 0.755178
Target:  5'- cCGGCCgGCgCGGccUCgGCCGCCCAg- -3'
miRNA:   3'- -GUCGGaCG-GUUucAGgCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 13427 0.66 0.745599
Target:  5'- aGGCCcGCCc-GGUCaucaCGCUGCCCGUg -3'
miRNA:   3'- gUCGGaCGGuuUCAG----GCGGCGGGUAa -5'
28944 5' -58.9 NC_006146.1 + 68932 0.66 0.745599
Target:  5'- gAGCCUcuaGCCAGAGcCCGgaGCCCc-- -3'
miRNA:   3'- gUCGGA---CGGUUUCaGGCggCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 130609 0.66 0.745599
Target:  5'- uGGCCUGCCcggccucuuuGGcCCGCCuccGCCCGc- -3'
miRNA:   3'- gUCGGACGGuu--------UCaGGCGG---CGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 15710 0.66 0.744636
Target:  5'- gGGCCacugGCCGAGGagagggggcuguuUCCuCCGCCCAg- -3'
miRNA:   3'- gUCGGa---CGGUUUC-------------AGGcGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 122805 0.67 0.726156
Target:  5'- gCGGCCgagGCCGcgcuGUCgGCCGCCg--- -3'
miRNA:   3'- -GUCGGa--CGGUuu--CAGgCGGCGGguaa -5'
28944 5' -58.9 NC_006146.1 + 13253 0.67 0.71631
Target:  5'- uCAGCCUGguCCAGGGgCUGgUGCCCAa- -3'
miRNA:   3'- -GUCGGAC--GGUUUCaGGCgGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 46743 0.67 0.71631
Target:  5'- aGGCCacgcugGCCAGGGUCCucGCCuCCCGa- -3'
miRNA:   3'- gUCGGa-----CGGUUUCAGG--CGGcGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 21308 0.67 0.71631
Target:  5'- gCGGCCaGCCuccucucCCGCCGCCCc-- -3'
miRNA:   3'- -GUCGGaCGGuuuca--GGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 127269 0.67 0.706392
Target:  5'- cCAGgCgGCCAcgccCCGCCGCCCAc- -3'
miRNA:   3'- -GUCgGaCGGUuucaGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 23157 0.67 0.706392
Target:  5'- -cGCUUGCaCAGAGUCgcuCGCgGCCCGc- -3'
miRNA:   3'- guCGGACG-GUUUCAG---GCGgCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 131218 0.67 0.706392
Target:  5'- gCGGCgCUGCaggcccaGGAGcCCGCCGCCUc-- -3'
miRNA:   3'- -GUCG-GACGg------UUUCaGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 53029 0.67 0.706392
Target:  5'- gCGGCUgGCCGcGG-CCGCCGCCgAg- -3'
miRNA:   3'- -GUCGGaCGGUuUCaGGCGGCGGgUaa -5'
28944 5' -58.9 NC_006146.1 + 55527 0.67 0.696413
Target:  5'- gCGGCCaggGCCuccAGcUCCGCCGCCaCGc- -3'
miRNA:   3'- -GUCGGa--CGGuu-UC-AGGCGGCGG-GUaa -5'
28944 5' -58.9 NC_006146.1 + 3540 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 1676 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 745 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5'
28944 5' -58.9 NC_006146.1 + 2608 0.67 0.68638
Target:  5'- uCAGCCcccgGCCGgcG-CCGCCGCgCGUg -3'
miRNA:   3'- -GUCGGa---CGGUuuCaGGCGGCGgGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.