miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28944 5' -58.9 NC_006146.1 + 135426 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135519 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135612 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135797 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135890 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 135983 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136076 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136169 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 136262 0.77 0.208018
Target:  5'- gGGCCgcUGCC-GGGUCCGCUGCCCGg- -3'
miRNA:   3'- gUCGG--ACGGuUUCAGGCGGCGGGUaa -5'
28944 5' -58.9 NC_006146.1 + 114046 0.75 0.277466
Target:  5'- cCAGCCccaGCCAAAG-CUGCCGCCCc-- -3'
miRNA:   3'- -GUCGGa--CGGUUUCaGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136121 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136028 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135935 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135842 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135749 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135657 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135564 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135471 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 135285 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
28944 5' -58.9 NC_006146.1 + 136214 0.74 0.333328
Target:  5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3'
miRNA:   3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.