Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28944 | 5' | -58.9 | NC_006146.1 | + | 136771 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135285 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136586 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135657 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135378 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135471 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135564 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136493 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135749 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135842 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 135935 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136028 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136121 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136214 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136307 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 136400 | 0.74 | 0.333328 |
Target: 5'- gGGCCgggUGCCccuGGGUCCGCUGCCCc-- -3' miRNA: 3'- gUCGG---ACGGu--UUCAGGCGGCGGGuaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 16947 | 0.73 | 0.372227 |
Target: 5'- cCGGUgUGCCAgcGUCCccccaGCCGCCCAg- -3' miRNA: 3'- -GUCGgACGGUuuCAGG-----CGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 10964 | 0.73 | 0.37547 |
Target: 5'- cCAGCCUGCCAcAGUCaccuaaagcaggcggCGCUGCCgGUg -3' miRNA: 3'- -GUCGGACGGUuUCAG---------------GCGGCGGgUAa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 13869 | 0.72 | 0.405498 |
Target: 5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3' miRNA: 3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5' |
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28944 | 5' | -58.9 | NC_006146.1 | + | 20024 | 0.72 | 0.405498 |
Target: 5'- cCGGUgUGCCAgcGUCCcccgcaGCCGCCCAg- -3' miRNA: 3'- -GUCGgACGGUuuCAGG------CGGCGGGUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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