Results 1 - 20 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28947 | 5' | -53 | NC_006146.1 | + | 170679 | 0.66 | 0.98647 |
Target: 5'- -aGGCCAGgggcGCCCCG------GGGACCg -3' miRNA: 3'- ggCCGGUC----CGGGGUauugauUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 170390 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 170326 | 0.7 | 0.894358 |
Target: 5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3' miRNA: 3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 170167 | 0.69 | 0.920189 |
Target: 5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3' miRNA: 3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 170040 | 0.68 | 0.953824 |
Target: 5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3' miRNA: 3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169956 | 0.71 | 0.852049 |
Target: 5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3' miRNA: 3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169735 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169459 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169413 | 0.66 | 0.976268 |
Target: 5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3' miRNA: 3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169395 | 0.7 | 0.894358 |
Target: 5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3' miRNA: 3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169236 | 0.69 | 0.920189 |
Target: 5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3' miRNA: 3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169108 | 0.68 | 0.953824 |
Target: 5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3' miRNA: 3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 169024 | 0.71 | 0.852049 |
Target: 5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3' miRNA: 3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168849 | 0.68 | 0.957308 |
Target: 5'- -gGGCCaacucucGGGCCCUcucuUGGCgcuGAGGCCu -3' miRNA: 3'- ggCCGG-------UCCGGGGu---AUUGau-UUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168803 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168620 | 0.68 | 0.958057 |
Target: 5'- -gGGCCuGGCUCCGgugaccucaaagccaAACUGucGGCCa -3' miRNA: 3'- ggCCGGuCCGGGGUa--------------UUGAUuuCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168527 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168463 | 0.7 | 0.894358 |
Target: 5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3' miRNA: 3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168339 | 0.71 | 0.859861 |
Target: 5'- aCGuCCAGaGCCUCAgugGGCUGAAGAaCCa -3' miRNA: 3'- gGCcGGUC-CGGGGUa--UUGAUUUCU-GG- -5' |
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28947 | 5' | -53 | NC_006146.1 | + | 168304 | 0.69 | 0.920189 |
Target: 5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3' miRNA: 3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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