miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28947 5' -53 NC_006146.1 + 123949 0.82 0.306814
Target:  5'- gCCGGCgaaauacgCGGGCaCCCuGUGGCUGGAGACCg -3'
miRNA:   3'- -GGCCG--------GUCCG-GGG-UAUUGAUUUCUGG- -5'
28947 5' -53 NC_006146.1 + 34892 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 35077 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 103869 0.66 0.986633
Target:  5'- cCCGGCCGacugucGGCUCCcgGACacgcggcucacccGGGCCa -3'
miRNA:   3'- -GGCCGGU------CCGGGGuaUUGauu----------UCUGG- -5'
28947 5' -53 NC_006146.1 + 33684 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33777 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33962 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34055 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34334 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34799 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34520 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34241 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33405 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34613 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33498 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34148 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34706 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 34984 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33591 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28947 5' -53 NC_006146.1 + 33870 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.