miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2895 3' -50 NC_001493.1 + 20769 1.14 0.005134
Target:  5'- cUCAAGAUCGACAACCUGACCGUGACCg -3'
miRNA:   3'- -AGUUCUAGCUGUUGGACUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 86703 0.94 0.098723
Target:  5'- cCGAGAUCGACAACUUGGCCG-GACCc -3'
miRNA:   3'- aGUUCUAGCUGUUGGACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 29766 0.78 0.617873
Target:  5'- --cAGAUCGcgAACCUGcACCGUGACCu -3'
miRNA:   3'- aguUCUAGCugUUGGAC-UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 111332 0.77 0.681502
Target:  5'- uUCGGGAugUCGA-GACC-GGCCGUGACCu -3'
miRNA:   3'- -AGUUCU--AGCUgUUGGaCUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 49456 0.75 0.77327
Target:  5'- uUUGAGAUCGGCAua--GACUGUGGCCg -3'
miRNA:   3'- -AGUUCUAGCUGUuggaCUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 21389 0.74 0.828807
Target:  5'- cCAGGggCGGCGGCCUGAaggUCG-GGCCu -3'
miRNA:   3'- aGUUCuaGCUGUUGGACU---GGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 93781 0.73 0.869884
Target:  5'- gCGGGG-CGuacuACGACgaGGCCGUGACCa -3'
miRNA:   3'- aGUUCUaGC----UGUUGgaCUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 32149 0.73 0.884752
Target:  5'- gUCGAcGGUCGugAACUUGAcaCCG-GGCCg -3'
miRNA:   3'- -AGUU-CUAGCugUUGGACU--GGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 35745 0.72 0.891827
Target:  5'- -gGAGGUCGugGCGGCCaUGACgGcUGACCa -3'
miRNA:   3'- agUUCUAGC--UGUUGG-ACUGgC-ACUGG- -5'
2895 3' -50 NC_001493.1 + 73246 0.72 0.911561
Target:  5'- aCGAGAaguuuucacucUUGACggUCUuuucGGCCGUGGCCa -3'
miRNA:   3'- aGUUCU-----------AGCUGuuGGA----CUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 110685 0.72 0.917632
Target:  5'- aCAGGGUCGACGAUC--GCCGUGuCa -3'
miRNA:   3'- aGUUCUAGCUGUUGGacUGGCACuGg -5'
2895 3' -50 NC_001493.1 + 63001 0.72 0.917632
Target:  5'- aCGGGA---GCGACCgGcACCGUGACCg -3'
miRNA:   3'- aGUUCUagcUGUUGGaC-UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 63043 0.72 0.917632
Target:  5'- aCGGGA---GCGACCgGuACCGUGACCa -3'
miRNA:   3'- aGUUCUagcUGUUGGaC-UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 57722 0.71 0.923446
Target:  5'- aCGGuAUCGACcgugcACgaGGCCGUGACCg -3'
miRNA:   3'- aGUUcUAGCUGu----UGgaCUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 126720 0.71 0.944126
Target:  5'- cCGAGGcgGACGAUCUGACCa-GACCa -3'
miRNA:   3'- aGUUCUagCUGUUGGACUGGcaCUGG- -5'
2895 3' -50 NC_001493.1 + 11165 0.71 0.944126
Target:  5'- cCGAGGcgGACGAUCUGACCa-GACCa -3'
miRNA:   3'- aGUUCUagCUGUUGGACUGGcaCUGG- -5'
2895 3' -50 NC_001493.1 + 52936 0.7 0.956972
Target:  5'- cUCAAGA-CGGCGAuCCUaucGAuCCGUGACg -3'
miRNA:   3'- -AGUUCUaGCUGUU-GGA---CU-GGCACUGg -5'
2895 3' -50 NC_001493.1 + 62875 0.7 0.960763
Target:  5'- aCGGG---GGCGACCgGcACCGUGACCa -3'
miRNA:   3'- aGUUCuagCUGUUGGaC-UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 63121 0.7 0.960763
Target:  5'- aCGGG---GGCGACCgGcACCGUGACCa -3'
miRNA:   3'- aGUUCuagCUGUUGGaC-UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 62959 0.7 0.960763
Target:  5'- aCGGG---GGCGACCgGcACCGUGACCa -3'
miRNA:   3'- aGUUCuagCUGUUGGaC-UGGCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.