miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2895 3' -50 NC_001493.1 + 1930 0.66 0.995693
Target:  5'- uUCAAGAUgGACGGggUCaUGACCG-GGCg -3'
miRNA:   3'- -AGUUCUAgCUGUU--GG-ACUGGCaCUGg -5'
2895 3' -50 NC_001493.1 + 1944 0.67 0.992194
Target:  5'- cCAAGGUCGAuCGACgUGGCaaaGcUGACg -3'
miRNA:   3'- aGUUCUAGCU-GUUGgACUGg--C-ACUGg -5'
2895 3' -50 NC_001493.1 + 3268 0.66 0.996329
Target:  5'- aCGAGAagGAUgaggAACCgggcaccGGCCGUGACg -3'
miRNA:   3'- aGUUCUagCUG----UUGGa------CUGGCACUGg -5'
2895 3' -50 NC_001493.1 + 5527 0.69 0.976282
Target:  5'- gCGGGAggagCGA--GCCgcgGACCGgUGACCa -3'
miRNA:   3'- aGUUCUa---GCUguUGGa--CUGGC-ACUGG- -5'
2895 3' -50 NC_001493.1 + 9650 0.69 0.978746
Target:  5'- ---uGAUCGGCGcgcuCCUGACCcuacugaUGACCa -3'
miRNA:   3'- aguuCUAGCUGUu---GGACUGGc------ACUGG- -5'
2895 3' -50 NC_001493.1 + 10868 0.66 0.99497
Target:  5'- -----uUCGGCGAUCggUGACCGcGGCCg -3'
miRNA:   3'- aguucuAGCUGUUGG--ACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 11165 0.71 0.944126
Target:  5'- cCGAGGcgGACGAUCUGACCa-GACCa -3'
miRNA:   3'- aGUUCUagCUGUUGGACUGGcaCUGG- -5'
2895 3' -50 NC_001493.1 + 12035 0.69 0.978746
Target:  5'- gCGAGAgaGACcACCUGugUGUGugUg -3'
miRNA:   3'- aGUUCUagCUGuUGGACugGCACugG- -5'
2895 3' -50 NC_001493.1 + 12590 0.66 0.996886
Target:  5'- cCAGGAgaugguaucgUGGCGACUccgaucGGCCGUGAUCg -3'
miRNA:   3'- aGUUCUa---------GCUGUUGGa-----CUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 13618 0.68 0.983099
Target:  5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3'
miRNA:   3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 16027 0.68 0.983099
Target:  5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3'
miRNA:   3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5'
2895 3' -50 NC_001493.1 + 16077 0.66 0.995693
Target:  5'- aCGAGGUCGAUGGguuuuuccgcCCUGuCCGcGAUCa -3'
miRNA:   3'- aGUUCUAGCUGUU----------GGACuGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 17847 0.66 0.99527
Target:  5'- -uGAGGUCGGCGAggaUGgucgcgcaaauguccACCGUGGCCc -3'
miRNA:   3'- agUUCUAGCUGUUgg-AC---------------UGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 18064 0.66 0.996886
Target:  5'- ---cGGUCGGgGGCCUGggugccGCCGUGAa- -3'
miRNA:   3'- aguuCUAGCUgUUGGAC------UGGCACUgg -5'
2895 3' -50 NC_001493.1 + 20769 1.14 0.005134
Target:  5'- cUCAAGAUCGACAACCUGACCGUGACCg -3'
miRNA:   3'- -AGUUCUAGCUGUUGGACUGGCACUGG- -5'
2895 3' -50 NC_001493.1 + 21389 0.74 0.828807
Target:  5'- cCAGGggCGGCGGCCUGAaggUCG-GGCCu -3'
miRNA:   3'- aGUUCuaGCUGUUGGACU---GGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 23199 0.66 0.995693
Target:  5'- uUCGGGA-CGACGAgUUUGGCCG-GGCUc -3'
miRNA:   3'- -AGUUCUaGCUGUU-GGACUGGCaCUGG- -5'
2895 3' -50 NC_001493.1 + 24383 0.69 0.978746
Target:  5'- cUCAGGGUCGcCAACCacuCgGUGACg -3'
miRNA:   3'- -AGUUCUAGCuGUUGGacuGgCACUGg -5'
2895 3' -50 NC_001493.1 + 27629 0.67 0.989749
Target:  5'- cUCGGGAUCGGCcccgauACCaccGGCCGgGACa -3'
miRNA:   3'- -AGUUCUAGCUGu-----UGGa--CUGGCaCUGg -5'
2895 3' -50 NC_001493.1 + 28047 0.67 0.99323
Target:  5'- --cGGGUgGAuCGACCgGACCGggcGGCCg -3'
miRNA:   3'- aguUCUAgCU-GUUGGaCUGGCa--CUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.