Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2895 | 3' | -50 | NC_001493.1 | + | 117484 | 0.66 | 0.995693 |
Target: 5'- uUCAAGAUgGACGGggUCaUGACCG-GGCg -3' miRNA: 3'- -AGUUCUAgCUGUU--GG-ACUGGCaCUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 129172 | 0.68 | 0.983099 |
Target: 5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3' miRNA: 3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 131582 | 0.68 | 0.983099 |
Target: 5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3' miRNA: 3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 27629 | 0.67 | 0.989749 |
Target: 5'- cUCGGGAUCGGCcccgauACCaccGGCCGgGACa -3' miRNA: 3'- -AGUUCUAGCUGu-----UGGa--CUGGCaCUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 28047 | 0.67 | 0.99323 |
Target: 5'- --cGGGUgGAuCGACCgGACCGggcGGCCg -3' miRNA: 3'- aguUCUAgCU-GUUGGaCUGGCa--CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 94341 | 0.67 | 0.994152 |
Target: 5'- gUAGGAUCGcgugguACGACCUcacGGCCccggguauccugGUGACCu -3' miRNA: 3'- aGUUCUAGC------UGUUGGA---CUGG------------CACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 17847 | 0.66 | 0.99527 |
Target: 5'- -uGAGGUCGGCGAggaUGgucgcgcaaauguccACCGUGGCCc -3' miRNA: 3'- agUUCUAGCUGUUgg-AC---------------UGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 133401 | 0.66 | 0.99527 |
Target: 5'- -uGAGGUCGGCGAggaUGgucgcgcaaauguccACCGUGGCCc -3' miRNA: 3'- agUUCUAGCUGUUgg-AC---------------UGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 1930 | 0.66 | 0.995693 |
Target: 5'- uUCAAGAUgGACGGggUCaUGACCG-GGCg -3' miRNA: 3'- -AGUUCUAgCUGUU--GG-ACUGGCaCUGg -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 88040 | 0.68 | 0.983099 |
Target: 5'- uUCGAGAUCGGUAACCgGgaacauaccGCCGgucucGACCa -3' miRNA: 3'- -AGUUCUAGCUGUUGGaC---------UGGCa----CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 16027 | 0.68 | 0.983099 |
Target: 5'- cCGAGAUgGGCGuCCaUGACUGgagcGACCu -3' miRNA: 3'- aGUUCUAgCUGUuGG-ACUGGCa---CUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 13618 | 0.68 | 0.983099 |
Target: 5'- aUCGcgcGGAUCGuCGgaagaugcgugcACCUGcgcGCCGUGACUa -3' miRNA: 3'- -AGU---UCUAGCuGU------------UGGAC---UGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 32149 | 0.73 | 0.884752 |
Target: 5'- gUCGAcGGUCGugAACUUGAcaCCG-GGCCg -3' miRNA: 3'- -AGUU-CUAGCugUUGGACU--GGCaCUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 35745 | 0.72 | 0.891827 |
Target: 5'- -gGAGGUCGugGCGGCCaUGACgGcUGACCa -3' miRNA: 3'- agUUCUAGC--UGUUGG-ACUGgC-ACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 11165 | 0.71 | 0.944126 |
Target: 5'- cCGAGGcgGACGAUCUGACCa-GACCa -3' miRNA: 3'- aGUUCUagCUGUUGGACUGGcaCUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 126720 | 0.71 | 0.944126 |
Target: 5'- cCGAGGcgGACGAUCUGACCa-GACCa -3' miRNA: 3'- aGUUCUagCUGUUGGACUGGcaCUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 57668 | 0.69 | 0.966666 |
Target: 5'- -aGAGAaaUCGACGGCgUccuccagaucacugGGCUGUGACCa -3' miRNA: 3'- agUUCU--AGCUGUUGgA--------------CUGGCACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 9650 | 0.69 | 0.978746 |
Target: 5'- ---uGAUCGGCGcgcuCCUGACCcuacugaUGACCa -3' miRNA: 3'- aguuCUAGCUGUu---GGACUGGc------ACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 125204 | 0.69 | 0.978746 |
Target: 5'- ---uGAUCGGCGcgcuCCUGACCcuacugaUGACCa -3' miRNA: 3'- aguuCUAGCUGUu---GGACUGGc------ACUGG- -5' |
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2895 | 3' | -50 | NC_001493.1 | + | 45895 | 0.68 | 0.981016 |
Target: 5'- gCGAGG-CGGCcagaaaaauGACCUGACUGacggGGCCa -3' miRNA: 3'- aGUUCUaGCUG---------UUGGACUGGCa---CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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