Results 41 - 60 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 5' | -53 | NC_006146.1 | + | 167871 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 120182 | 0.66 | 0.976268 |
Target: 5'- cCCGaCCGGGCCCUcgu-CUAu-GACCc -3' miRNA: 3'- -GGCcGGUCCGGGGuauuGAUuuCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 123551 | 0.66 | 0.984764 |
Target: 5'- aCGGU--GGCCCCGUAGCacgugccGAGGAUg -3' miRNA: 3'- gGCCGguCCGGGGUAUUGa------UUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 138092 | 0.66 | 0.978659 |
Target: 5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3' miRNA: 3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 150793 | 0.66 | 0.98647 |
Target: 5'- -gGuGCCGGGCCaCCGUGuccaGCUuguagucagAGAGGCUg -3' miRNA: 3'- ggC-CGGUCCGG-GGUAU----UGA---------UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 169735 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 128754 | 0.66 | 0.978659 |
Target: 5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3' miRNA: 3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 63438 | 0.66 | 0.980867 |
Target: 5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3' miRNA: 3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167177 | 0.66 | 0.976268 |
Target: 5'- -gGGCCAcgcGGCCCCc-----AGAGACCc -3' miRNA: 3'- ggCCGGU---CCGGGGuauugaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 33715 | 0.66 | 0.982899 |
Target: 5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3' miRNA: 3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 55597 | 0.66 | 0.980867 |
Target: 5'- -aGGUCuGGUCCCAgAGC--AGGGCCu -3' miRNA: 3'- ggCCGGuCCGGGGUaUUGauUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 135699 | 0.66 | 0.977247 |
Target: 5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3' miRNA: 3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 161790 | 0.66 | 0.978659 |
Target: 5'- aCCGGCUccacgguggauAGGCUCCcug---GGAGACCc -3' miRNA: 3'- -GGCCGG-----------UCCGGGGuauugaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 34262 | 0.66 | 0.978659 |
Target: 5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3' miRNA: 3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 170679 | 0.66 | 0.98647 |
Target: 5'- -aGGCCAGgggcGCCCCG------GGGACCg -3' miRNA: 3'- ggCCGGUC----CGGGGUauugauUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 25693 | 0.66 | 0.984764 |
Target: 5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3' miRNA: 3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 168803 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 169413 | 0.66 | 0.976268 |
Target: 5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3' miRNA: 3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 19537 | 0.66 | 0.984764 |
Target: 5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3' miRNA: 3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 49009 | 0.66 | 0.982307 |
Target: 5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3' miRNA: 3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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