Results 41 - 60 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 5' | -53 | NC_006146.1 | + | 12643 | 0.74 | 0.694972 |
Target: 5'- -gGGCCAGaGUCCCcccgaGUGGCUcAAGGGCCa -3' miRNA: 3'- ggCCGGUC-CGGGG-----UAUUGA-UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 12646 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 12864 | 0.68 | 0.953824 |
Target: 5'- -gGGCgAGGCUggGUGGCUGGgcAGGCCg -3' miRNA: 3'- ggCCGgUCCGGggUAUUGAUU--UCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 12985 | 0.68 | 0.953824 |
Target: 5'- gUCGGCCuAGGCCCgGgGAgUGGAGGg- -3' miRNA: 3'- -GGCCGG-UCCGGGgUaUUgAUUUCUgg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 13338 | 0.67 | 0.961317 |
Target: 5'- gUCGGCCGcGGCCUac--GC-GGAGGCCa -3' miRNA: 3'- -GGCCGGU-CCGGGguauUGaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 13381 | 0.66 | 0.984764 |
Target: 5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3' miRNA: 3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 13458 | 0.68 | 0.940845 |
Target: 5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3' miRNA: 3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 13563 | 0.67 | 0.970907 |
Target: 5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3' miRNA: 3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 13731 | 0.69 | 0.920189 |
Target: 5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3' miRNA: 3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 13897 | 0.67 | 0.964728 |
Target: 5'- aCGGCCgAGGCCgCgCGUGACUuuuuGGAa- -3' miRNA: 3'- gGCCGG-UCCGG-G-GUAUUGAuu--UCUgg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 14054 | 0.69 | 0.931 |
Target: 5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3' miRNA: 3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 14095 | 0.67 | 0.973686 |
Target: 5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3' miRNA: 3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 14540 | 0.79 | 0.464052 |
Target: 5'- cCUGGaCCGGGCCCUggAGCUGcuGGGCCg -3' miRNA: 3'- -GGCC-GGUCCGGGGuaUUGAUu-UCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 14813 | 0.73 | 0.758357 |
Target: 5'- gCCGGCCGGGCCggaggagggcacgguCUcgGGCccGGGGCCg -3' miRNA: 3'- -GGCCGGUCCGG---------------GGuaUUGauUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15031 | 0.67 | 0.967923 |
Target: 5'- uCCaGGcCCGGGCCCCcagguCUc-GGGCCa -3' miRNA: 3'- -GG-CC-GGUCCGGGGuauu-GAuuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15040 | 0.69 | 0.936044 |
Target: 5'- cCUGGCCAGGgCCCGccgGGCcugcgaGGAGGCa -3' miRNA: 3'- -GGCCGGUCCgGGGUa--UUGa-----UUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15682 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15725 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15919 | 0.74 | 0.684809 |
Target: 5'- uCUGuGCCGGGCCCU---GCgcGAGGCCg -3' miRNA: 3'- -GGC-CGGUCCGGGGuauUGauUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 15942 | 0.68 | 0.953824 |
Target: 5'- -gGGCgAGGCUggGUGGCUGGgcAGGCCg -3' miRNA: 3'- ggCCGgUCCGGggUAUUGAUU--UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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