miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 5' -53 NC_006146.1 + 4937 0.68 0.949733
Target:  5'- gUGGCCGugcucuGuGCCCCGggGACcAGGGGCCa -3'
miRNA:   3'- gGCCGGU------C-CGGGGUa-UUGaUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 5113 0.72 0.810111
Target:  5'- gCCGGCCGuGCCaCCGUGGCUcugAuuGAUCg -3'
miRNA:   3'- -GGCCGGUcCGG-GGUAUUGA---UuuCUGG- -5'
28955 5' -53 NC_006146.1 + 5178 0.75 0.674603
Target:  5'- cCUGGCCAGGCCCgA-GACguuuucccuGGGCCu -3'
miRNA:   3'- -GGCCGGUCCGGGgUaUUGauu------UCUGG- -5'
28955 5' -53 NC_006146.1 + 6408 0.68 0.949733
Target:  5'- -gGGCCaugGGGUCCCuuUGGCccAGGGCCa -3'
miRNA:   3'- ggCCGG---UCCGGGGu-AUUGauUUCUGG- -5'
28955 5' -53 NC_006146.1 + 6604 0.68 0.949733
Target:  5'- aCGGCaguGGCCCCG--GC---GGACCu -3'
miRNA:   3'- gGCCGgu-CCGGGGUauUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 6658 0.66 0.978659
Target:  5'- gUGGCCcaccAGGCCCCAcugaugguggUAAC-AAuGGCCc -3'
miRNA:   3'- gGCCGG----UCCGGGGU----------AUUGaUUuCUGG- -5'
28955 5' -53 NC_006146.1 + 6891 0.66 0.982899
Target:  5'- uUGGCCaacaAGGCCgCCGUGACgu-AGcauaACCu -3'
miRNA:   3'- gGCCGG----UCCGG-GGUAUUGauuUC----UGG- -5'
28955 5' -53 NC_006146.1 + 7114 0.68 0.945408
Target:  5'- -aGGcCCAGGCUgCAUAcuaACUAGAGgaugGCCu -3'
miRNA:   3'- ggCC-GGUCCGGgGUAU---UGAUUUC----UGG- -5'
28955 5' -53 NC_006146.1 + 7695 0.66 0.980867
Target:  5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3'
miRNA:   3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5'
28955 5' -53 NC_006146.1 + 9308 0.68 0.957684
Target:  5'- gCCGGCCGGGCagCAUuuGCUAuccGGCg -3'
miRNA:   3'- -GGCCGGUCCGggGUAu-UGAUuu-CUGg -5'
28955 5' -53 NC_006146.1 + 10225 0.68 0.949733
Target:  5'- aCCGGCCcuGGUCaugugCCGgcucCUGAAGGCCu -3'
miRNA:   3'- -GGCCGGu-CCGG-----GGUauu-GAUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 10556 0.69 0.936044
Target:  5'- --cGCCAGuuCCCCGUGACau-GGACCg -3'
miRNA:   3'- ggcCGGUCc-GGGGUAUUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5'
28955 5' -53 NC_006146.1 + 10918 0.69 0.920189
Target:  5'- -aGGCCAGaCCCCA--ACUGcGGGCUc -3'
miRNA:   3'- ggCCGGUCcGGGGUauUGAUuUCUGG- -5'
28955 5' -53 NC_006146.1 + 11016 0.77 0.521825
Target:  5'- cCCGGCCucgAGGCCCUcu-GCgagGAGACCa -3'
miRNA:   3'- -GGCCGG---UCCGGGGuauUGau-UUCUGG- -5'
28955 5' -53 NC_006146.1 + 11541 0.69 0.914421
Target:  5'- gCGGUCAGcuacGCCCCcgccauGCUGGAGGCg -3'
miRNA:   3'- gGCCGGUC----CGGGGuau---UGAUUUCUGg -5'
28955 5' -53 NC_006146.1 + 11545 0.7 0.871923
Target:  5'- uUGGCCAaucagcGGUCCCuaaggggggcuGCUAAGGACCc -3'
miRNA:   3'- gGCCGGU------CCGGGGuau--------UGAUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 11585 0.67 0.967923
Target:  5'- gCCGGCCA-GCCUCAacuacGACUccuGGCCc -3'
miRNA:   3'- -GGCCGGUcCGGGGUa----UUGAuuuCUGG- -5'
28955 5' -53 NC_006146.1 + 12050 0.76 0.602651
Target:  5'- gCGGCCAccaGCCCCAUGugcucGCUuugcGAGGGCCg -3'
miRNA:   3'- gGCCGGUc--CGGGGUAU-----UGA----UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 12603 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.