Results 21 - 40 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 5' | -53 | NC_006146.1 | + | 99125 | 0.66 | 0.9817 |
Target: 5'- uCCGGCCucaggcgucuccacaGgGGCUCCAgcgaccggcaggUGGCgGAGGGCCa -3' miRNA: 3'- -GGCCGG---------------U-CCGGGGU------------AUUGaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 2293 | 0.66 | 0.978659 |
Target: 5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3' miRNA: 3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 34262 | 0.66 | 0.978659 |
Target: 5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3' miRNA: 3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 10650 | 0.66 | 0.976268 |
Target: 5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3' miRNA: 3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 6891 | 0.66 | 0.982899 |
Target: 5'- uUGGCCaacaAGGCCgCCGUGACgu-AGcauaACCu -3' miRNA: 3'- gGCCGG----UCCGG-GGUAUUGauuUC----UGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 151580 | 0.66 | 0.983093 |
Target: 5'- gCCGGCCuGGUugccguagCCCAUGAUggagcggcgcguGACCc -3' miRNA: 3'- -GGCCGGuCCG--------GGGUAUUGauuu--------CUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 19537 | 0.66 | 0.984764 |
Target: 5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3' miRNA: 3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 49009 | 0.66 | 0.982307 |
Target: 5'- aCCGGCUAGGagccgcagggcguuCUCCGgGGCgcggcccGAGACCg -3' miRNA: 3'- -GGCCGGUCC--------------GGGGUaUUGau-----UUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 149978 | 0.66 | 0.982107 |
Target: 5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3' miRNA: 3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 128754 | 0.66 | 0.978659 |
Target: 5'- uCCGuGCCAGGCCgaCAc-GCUcAGGGACa -3' miRNA: 3'- -GGC-CGGUCCGGg-GUauUGA-UUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 60007 | 0.66 | 0.979563 |
Target: 5'- -aGGCCAacgcGGCCCCGUccccgccugcgcccgAGCccGAGACg -3' miRNA: 3'- ggCCGGU----CCGGGGUA---------------UUGauUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 63438 | 0.66 | 0.980867 |
Target: 5'- gCGGCCAuGCgCCAcaAGCUGAAGAa- -3' miRNA: 3'- gGCCGGUcCGgGGUa-UUGAUUUCUgg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 33715 | 0.66 | 0.982899 |
Target: 5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3' miRNA: 3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 117874 | 0.66 | 0.978659 |
Target: 5'- gCGGCUgagauGGGCaCCCGaGGCUGGucaucGACCc -3' miRNA: 3'- gGCCGG-----UCCG-GGGUaUUGAUUu----CUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 138092 | 0.66 | 0.978659 |
Target: 5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3' miRNA: 3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 55527 | 0.66 | 0.982899 |
Target: 5'- gCGGCCAGGgCCUccAGCUcc--GCCg -3' miRNA: 3'- gGCCGGUCCgGGGuaUUGAuuucUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 94159 | 0.66 | 0.982899 |
Target: 5'- cUCGuGCCcguGGGCCuCCAcgaAGCUGucGGCCu -3' miRNA: 3'- -GGC-CGG---UCCGG-GGUa--UUGAUuuCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 84531 | 0.66 | 0.976268 |
Target: 5'- gCCGGUaCAGGCgCCGUGGCaggugguuGGGCa -3' miRNA: 3'- -GGCCG-GUCCGgGGUAUUGauu-----UCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 162472 | 0.66 | 0.982899 |
Target: 5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3' miRNA: 3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167871 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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