Results 21 - 40 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28955 | 5' | -53 | NC_006146.1 | + | 168216 | 0.67 | 0.964728 |
Target: 5'- -aGGCCAGGgugcugccgUCUCAUAaacaGCUGAGGGCa -3' miRNA: 3'- ggCCGGUCC---------GGGGUAU----UGAUUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 168176 | 0.68 | 0.953824 |
Target: 5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3' miRNA: 3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 168092 | 0.71 | 0.852049 |
Target: 5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3' miRNA: 3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167871 | 0.66 | 0.980867 |
Target: 5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3' miRNA: 3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167765 | 0.69 | 0.920189 |
Target: 5'- gCCGGgUGGGCgCgCAUGGCUcGAGACg -3' miRNA: 3'- -GGCCgGUCCGgG-GUAUUGAuUUCUGg -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167595 | 0.77 | 0.541712 |
Target: 5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3' miRNA: 3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167531 | 0.7 | 0.894358 |
Target: 5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3' miRNA: 3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167372 | 0.69 | 0.920189 |
Target: 5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3' miRNA: 3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167244 | 0.68 | 0.953824 |
Target: 5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3' miRNA: 3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167177 | 0.66 | 0.976268 |
Target: 5'- -gGGCCAcgcGGCCCCc-----AGAGACCc -3' miRNA: 3'- ggCCGGU---CCGGGGuauugaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167160 | 0.71 | 0.852049 |
Target: 5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3' miRNA: 3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 167090 | 0.66 | 0.980867 |
Target: 5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3' miRNA: 3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 166548 | 0.69 | 0.936044 |
Target: 5'- -gGGCCGuGGCCaCGUcGCUGAAGAgCu -3' miRNA: 3'- ggCCGGU-CCGGgGUAuUGAUUUCUgG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 165645 | 0.69 | 0.924083 |
Target: 5'- cCCGGCuCGGGCguuggguccgugacCCCAcAGCcccGAGGCCg -3' miRNA: 3'- -GGCCG-GUCCG--------------GGGUaUUGau-UUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 164497 | 0.76 | 0.571989 |
Target: 5'- -gGGCCAaagGGaCCCCAUGGCccaaGAGGACCg -3' miRNA: 3'- ggCCGGU---CC-GGGGUAUUGa---UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 164446 | 0.7 | 0.881315 |
Target: 5'- -gGGCCgugguuguuguugGGGCCCCAUGGaccccAGGGCCc -3' miRNA: 3'- ggCCGG-------------UCCGGGGUAUUgau--UUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 162472 | 0.66 | 0.982899 |
Target: 5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3' miRNA: 3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 161957 | 0.68 | 0.95655 |
Target: 5'- cCCGGCUucccuuucgggcaacGCCCCGUG---GGAGACCg -3' miRNA: 3'- -GGCCGGuc-------------CGGGGUAUugaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 161890 | 0.68 | 0.95655 |
Target: 5'- cCCGGCUucccuuuugggcaacGCCCCGUG---GGAGACCg -3' miRNA: 3'- -GGCCGGuc-------------CGGGGUAUugaUUUCUGG- -5' |
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28955 | 5' | -53 | NC_006146.1 | + | 161838 | 0.75 | 0.643807 |
Target: 5'- -gGGCCAcGCCCCGUG---GGAGACCg -3' miRNA: 3'- ggCCGGUcCGGGGUAUugaUUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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