miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28955 5' -53 NC_006146.1 + 170679 0.66 0.98647
Target:  5'- -aGGCCAGgggcGCCCCG------GGGACCg -3'
miRNA:   3'- ggCCGGUC----CGGGGUauugauUUCUGG- -5'
28955 5' -53 NC_006146.1 + 170390 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 170326 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 170167 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 170040 0.68 0.953824
Target:  5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3'
miRNA:   3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169956 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169735 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169459 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169413 0.66 0.976268
Target:  5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3'
miRNA:   3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169395 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169236 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5'
28955 5' -53 NC_006146.1 + 169108 0.68 0.953824
Target:  5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3'
miRNA:   3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 169024 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 168849 0.68 0.957308
Target:  5'- -gGGCCaacucucGGGCCCUcucuUGGCgcuGAGGCCu -3'
miRNA:   3'- ggCCGG-------UCCGGGGu---AUUGau-UUCUGG- -5'
28955 5' -53 NC_006146.1 + 168803 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 168620 0.68 0.958057
Target:  5'- -gGGCCuGGCUCCGgugaccucaaagccaAACUGucGGCCa -3'
miRNA:   3'- ggCCGGuCCGGGGUa--------------UUGAUuuCUGG- -5'
28955 5' -53 NC_006146.1 + 168527 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28955 5' -53 NC_006146.1 + 168463 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28955 5' -53 NC_006146.1 + 168339 0.71 0.859861
Target:  5'- aCGuCCAGaGCCUCAgugGGCUGAAGAaCCa -3'
miRNA:   3'- gGCcGGUC-CGGGGUa--UUGAUUUCU-GG- -5'
28955 5' -53 NC_006146.1 + 168304 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.