miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28973 3' -62.9 NC_006146.1 + 43663 0.74 0.238294
Target:  5'- aGGGGCCcggcUCGCAuucGCuCCAGGCCcuccgagaAGGCCa -3'
miRNA:   3'- gCUCCGG----AGUGU---CG-GGUCCGG--------UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 76877 0.74 0.227514
Target:  5'- uCGGGGCCgu---GCCCcuGCCGGGCCg -3'
miRNA:   3'- -GCUCCGGaguguCGGGucCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 2447 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 148491 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 55735 0.72 0.305339
Target:  5'- -cAGGCCuUUACAGUCCcuGCCGGGCg -3'
miRNA:   3'- gcUCCGG-AGUGUCGGGucCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 40863 0.73 0.26054
Target:  5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3'
miRNA:   3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5'
28973 3' -62.9 NC_006146.1 + 57225 0.74 0.22228
Target:  5'- gGAGGCCg---GGCCCGGGCCcGaGCCa -3'
miRNA:   3'- gCUCCGGagugUCGGGUCCGGuC-CGG- -5'
28973 3' -62.9 NC_006146.1 + 145413 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 41775 0.73 0.25526
Target:  5'- gGAGGCCcUGC-GCCCGGGCgcccgcucuCAGGCCc -3'
miRNA:   3'- gCUCCGGaGUGuCGGGUCCG---------GUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 142335 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 105679 0.74 0.22228
Target:  5'- gCGAGGucaCCUCugGacGCCCGGGCUcccaGGGCCc -3'
miRNA:   3'- -GCUCC---GGAGugU--CGGGUCCGG----UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 42292 0.73 0.243842
Target:  5'- gGAGGCCagGUAGCCCAGcGCCAGaaaguacaGCCg -3'
miRNA:   3'- gCUCCGGagUGUCGGGUC-CGGUC--------CGG- -5'
28973 3' -62.9 NC_006146.1 + 103563 0.77 0.144451
Target:  5'- cCGAGGaugggCUCGCccgGGCCUGGGCCGGGCUc -3'
miRNA:   3'- -GCUCCg----GAGUG---UCGGGUCCGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 3379 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28973 3' -62.9 NC_006146.1 + 24046 0.79 0.102057
Target:  5'- gCGGGGUgaCGCGGCCCcGaGCCAGGCCc -3'
miRNA:   3'- -GCUCCGgaGUGUCGGGuC-CGGUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 151569 0.8 0.089979
Target:  5'- gCGAGGCCggGCAGgCCGGGC-AGGCCg -3'
miRNA:   3'- -GCUCCGGagUGUCgGGUCCGgUCCGG- -5'
28973 3' -62.9 NC_006146.1 + 152149 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 142915 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28973 3' -62.9 NC_006146.1 + 132221 0.72 0.279408
Target:  5'- -cAGGCCUUuaagGCAGCUCucgcGGCCGGGCa -3'
miRNA:   3'- gcUCCGGAG----UGUCGGGu---CCGGUCCGg -5'
28973 3' -62.9 NC_006146.1 + 122517 0.73 0.271366
Target:  5'- gGAGGCCgCGgAGCCCGGGugguucgcggaacuCgAGGCCg -3'
miRNA:   3'- gCUCCGGaGUgUCGGGUCC--------------GgUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.