miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 3' -62.9 NC_006146.1 + 169137 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 169074 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 169047 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28982 3' -62.9 NC_006146.1 + 168709 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 168650 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28982 3' -62.9 NC_006146.1 + 168633 0.67 0.563322
Target:  5'- gGGGGCUUCcccGgGGCCCGagcgcgcgucGGUgGGGCCu -3'
miRNA:   3'- gCUCCGGAG---UgUCGGGU----------CCGgUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 168543 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 168543 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28982 3' -62.9 NC_006146.1 + 168501 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 168500 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 168340 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 168205 0.66 0.631188
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCu -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 168141 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 168115 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28982 3' -62.9 NC_006146.1 + 167777 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 167718 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28982 3' -62.9 NC_006146.1 + 167710 0.68 0.470409
Target:  5'- cCGGGGCCcgagCGC-GCgUCGGGUgGGGCCu -3'
miRNA:   3'- -GCUCCGGa---GUGuCG-GGUCCGgUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 167641 0.66 0.611697
Target:  5'- gCGGGGCCcggCGCGuGCCgGGGgCCcggGGGCg -3'
miRNA:   3'- -GCUCCGGa--GUGU-CGGgUCC-GG---UCCGg -5'
28982 3' -62.9 NC_006146.1 + 167611 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 167569 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.