miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 3' -62.9 NC_006146.1 + 170937 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 170572 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 170513 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28982 3' -62.9 NC_006146.1 + 170496 0.67 0.544238
Target:  5'- gGGGGCUUCccCGGaCCCccagcgcgcggcGGGCgGGGCCu -3'
miRNA:   3'- gCUCCGGAGu-GUC-GGG------------UCCGgUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 170406 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28982 3' -62.9 NC_006146.1 + 170406 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 170364 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 170363 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 170203 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 170069 0.67 0.582581
Target:  5'- cCGGGGCCgCGCguggggauGGCCggcgggagGGGCCGGcGCCg -3'
miRNA:   3'- -GCUCCGGaGUG--------UCGGg-------UCCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 170006 0.68 0.506751
Target:  5'- aGGGGCUUCGuCAcGCUC-GGCUGGGUCg -3'
miRNA:   3'- gCUCCGGAGU-GU-CGGGuCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 169979 0.7 0.370279
Target:  5'- gGAGGCCggCGCGcGCCCGGGgucCCGGGg- -3'
miRNA:   3'- gCUCCGGa-GUGU-CGGGUCC---GGUCCgg -5'
28982 3' -62.9 NC_006146.1 + 169641 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 169582 0.79 0.110021
Target:  5'- aGGGGCCgggggCGCGGCCCGGcGCCAGcCCu -3'
miRNA:   3'- gCUCCGGa----GUGUCGGGUC-CGGUCcGG- -5'
28982 3' -62.9 NC_006146.1 + 169575 0.68 0.470409
Target:  5'- cCGGGGCCcgagCGC-GCgUCGGGUgGGGCCu -3'
miRNA:   3'- -GCUCCGGa---GUGuCG-GGUCCGgUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 169475 0.68 0.497548
Target:  5'- cCGGGaCCcCGCgcuGGCCCccGCCAGGCCc -3'
miRNA:   3'- -GCUCcGGaGUG---UCGGGucCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 169475 0.66 0.618515
Target:  5'- gGGGGCCUCGgGGgcggagggggggguCCCgcgGGGCCcGGCg -3'
miRNA:   3'- gCUCCGGAGUgUC--------------GGG---UCCGGuCCGg -5'
28982 3' -62.9 NC_006146.1 + 169433 0.69 0.426935
Target:  5'- uCGGGaGCCcccuCAGCCCccGGCCGGcGCCg -3'
miRNA:   3'- -GCUC-CGGagu-GUCGGGu-CCGGUC-CGG- -5'
28982 3' -62.9 NC_006146.1 + 169432 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 169272 0.7 0.410224
Target:  5'- cCGGGGCCUgGCGGgggCCAGcGCgGGGUCc -3'
miRNA:   3'- -GCUCCGGAgUGUCg--GGUC-CGgUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.