miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 170719 0.67 0.973686
Target:  5'- gCCGcGCCcccucAGGCCCCGcccgccgcgcGCUGGGGGuCCg -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUau--------UGAUUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 170679 0.66 0.98647
Target:  5'- -aGGCCAGgggcGCCCCG------GGGACCg -3'
miRNA:   3'- ggCCGGUC----CGGGGUauugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 170621 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 170390 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 170388 0.68 0.945408
Target:  5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3'
miRNA:   3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5'
28982 5' -53 NC_006146.1 + 170326 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 170265 0.69 0.936044
Target:  5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3'
miRNA:   3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 170167 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 170040 0.68 0.953824
Target:  5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3'
miRNA:   3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169956 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169788 0.66 0.982899
Target:  5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5'
28982 5' -53 NC_006146.1 + 169735 0.66 0.980867
Target:  5'- aUCGGCgCGGgggaGCCCCGgGGCggcccGGGGACCc -3'
miRNA:   3'- -GGCCG-GUC----CGGGGUaUUGa----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169690 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 169459 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169457 0.68 0.945408
Target:  5'- cCCcGCCAGGCCCCGgccccgccCUcgGGAgCCc -3'
miRNA:   3'- -GGcCGGUCCGGGGUauu-----GAuuUCU-GG- -5'
28982 5' -53 NC_006146.1 + 169395 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169333 0.69 0.936044
Target:  5'- gCCGGCCAuccccacgcgcGGCCCCGggccCUccccgacauccAGGGACUg -3'
miRNA:   3'- -GGCCGGU-----------CCGGGGUauu-GA-----------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169236 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 169108 0.68 0.953824
Target:  5'- gCGGCCAGuCCCUggAugUcgggGAGGGCCc -3'
miRNA:   3'- gGCCGGUCcGGGGuaUugA----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169024 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.