miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 1684 0.66 0.976268
Target:  5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3'
miRNA:   3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 2248 0.68 0.957308
Target:  5'- -gGGCCaacucucGGGCCCUcucuUGGCgcuGAGGCCu -3'
miRNA:   3'- ggCCGG-------UCCGGGGu---AUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 2293 0.66 0.978659
Target:  5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3'
miRNA:   3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5'
28982 5' -53 NC_006146.1 + 2477 0.68 0.958057
Target:  5'- -gGGCCuGGCUCCGgugaccucaaagccaAACUGucGGCCa -3'
miRNA:   3'- ggCCGGuCCGGGGUa--------------UUGAUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 2757 0.67 0.973686
Target:  5'- cCCGGCCcucgcAGGCCCaagcccgGAUgucaggGAAGACg -3'
miRNA:   3'- -GGCCGG-----UCCGGGgua----UUGa-----UUUCUGg -5'
28982 5' -53 NC_006146.1 + 2758 0.71 0.859861
Target:  5'- aCGuCCAGaGCCUCAgugGGCUGAAGAaCCa -3'
miRNA:   3'- gGCcGGUC-CGGGGUa--UUGAUUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 2881 0.67 0.964728
Target:  5'- -aGGCCAGGgugcugccgUCUCAUAaacaGCUGAGGGCa -3'
miRNA:   3'- ggCCGGUCC---------GGGGUAU----UGAUUUCUGg -5'
28982 5' -53 NC_006146.1 + 3332 0.69 0.920189
Target:  5'- gCCGGgUGGGCgCgCAUGGCUcGAGACg -3'
miRNA:   3'- -GGCCgGUCCGgG-GUAUUGAuUUCUGg -5'
28982 5' -53 NC_006146.1 + 3890 0.71 0.867464
Target:  5'- cUCGGCgAGGCCCaccGAC--GAGGCCc -3'
miRNA:   3'- -GGCCGgUCCGGGguaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 3920 0.66 0.976268
Target:  5'- -gGGCCAcgcGGCCCCc-----AGAGACCc -3'
miRNA:   3'- ggCCGGU---CCGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 4007 0.66 0.980867
Target:  5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3'
miRNA:   3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 4367 0.77 0.561845
Target:  5'- gUGGCCAcGGCCCCGcgGGCUccccAGGCCg -3'
miRNA:   3'- gGCCGGU-CCGGGGUa-UUGAuu--UCUGG- -5'
28982 5' -53 NC_006146.1 + 4549 0.69 0.936044
Target:  5'- -gGGCCGuGGCCaCGUcGCUGAAGAgCu -3'
miRNA:   3'- ggCCGGU-CCGGgGUAuUGAUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 4937 0.68 0.949733
Target:  5'- gUGGCCGugcucuGuGCCCCGggGACcAGGGGCCa -3'
miRNA:   3'- gGCCGGU------C-CGGGGUa-UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 5113 0.72 0.810111
Target:  5'- gCCGGCCGuGCCaCCGUGGCUcugAuuGAUCg -3'
miRNA:   3'- -GGCCGGUcCGG-GGUAUUGA---UuuCUGG- -5'
28982 5' -53 NC_006146.1 + 5178 0.75 0.674603
Target:  5'- cCUGGCCAGGCCCgA-GACguuuucccuGGGCCu -3'
miRNA:   3'- -GGCCGGUCCGGGgUaUUGauu------UCUGG- -5'
28982 5' -53 NC_006146.1 + 5452 0.69 0.924083
Target:  5'- cCCGGCuCGGGCguuggguccgugacCCCAcAGCcccGAGGCCg -3'
miRNA:   3'- -GGCCG-GUCCG--------------GGGUaUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 6891 0.66 0.982899
Target:  5'- uUGGCCaacaAGGCCgCCGUGACgu-AGcauaACCu -3'
miRNA:   3'- gGCCGG----UCCGG-GGUAUUGauuUC----UGG- -5'
28982 5' -53 NC_006146.1 + 9308 0.68 0.957684
Target:  5'- gCCGGCCGGGCagCAUuuGCUAuccGGCg -3'
miRNA:   3'- -GGCCGGUCCGggGUAu-UGAUuu-CUGg -5'
28982 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.