miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 11545 0.7 0.871923
Target:  5'- uUGGCCAaucagcGGUCCCuaaggggggcuGCUAAGGACCc -3'
miRNA:   3'- gGCCGGU------CCGGGGuau--------UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 11868 0.73 0.773576
Target:  5'- -gGGCCuacuuGGCCgCAUGGC-GAGGACCc -3'
miRNA:   3'- ggCCGGu----CCGGgGUAUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 12537 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 12581 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 12603 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 12646 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 12646 0.68 0.945408
Target:  5'- -gGGCCugaaAGGCCCCGgcgcCUGGcucauguguccAGACCg -3'
miRNA:   3'- ggCCGG----UCCGGGGUauu-GAUU-----------UCUGG- -5'
28982 5' -53 NC_006146.1 + 12809 0.69 0.920189
Target:  5'- gUGGCCuGGCCUg--GGCUGuGAGGCCu -3'
miRNA:   3'- gGCCGGuCCGGGguaUUGAU-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 12864 0.68 0.953824
Target:  5'- -gGGCgAGGCUggGUGGCUGGgcAGGCCg -3'
miRNA:   3'- ggCCGgUCCGGggUAUUGAUU--UCUGG- -5'
28982 5' -53 NC_006146.1 + 12919 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 12985 0.68 0.953824
Target:  5'- gUCGGCCuAGGCCCgGgGAgUGGAGGg- -3'
miRNA:   3'- -GGCCGG-UCCGGGgUaUUgAUUUCUgg -5'
28982 5' -53 NC_006146.1 + 13172 0.67 0.960964
Target:  5'- cCCgGGCCuAGGCcgacucucugacuCCCAgAGCUAccccAAGGCCa -3'
miRNA:   3'- -GG-CCGG-UCCG-------------GGGUaUUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 13381 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 13400 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 13458 0.68 0.940845
Target:  5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3'
miRNA:   3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 13563 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 13641 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 13731 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 13910 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 14020 0.7 0.882022
Target:  5'- gCCGGCCugauGGaCCCgGUGgggagacaaGCUGAgggGGGCCg -3'
miRNA:   3'- -GGCCGGu---CC-GGGgUAU---------UGAUU---UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.