miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 137599 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 136856 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 136670 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 137042 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 136298 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 137135 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135369 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 136113 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135555 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135462 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135648 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 136020 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135741 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135834 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 137413 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 59450 0.8 0.375898
Target:  5'- gUCGGCCAGGCCCUG-AACacccaggcccaUGGAGGCCa -3'
miRNA:   3'- -GGCCGGUCCGGGGUaUUG-----------AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 155203 0.8 0.375898
Target:  5'- cUCGGCCAguGGCCCCGUGAUgAAGGugUa -3'
miRNA:   3'- -GGCCGGU--CCGGGGUAUUGaUUUCugG- -5'
28982 5' -53 NC_006146.1 + 147063 0.79 0.454746
Target:  5'- -gGGCCAGGUCCCGgcgUAGggAAAGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGU---AUUgaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 46327 0.79 0.464052
Target:  5'- cUCGGCCGGGCuucugaccagCCgGUAGgUGAGGACCg -3'
miRNA:   3'- -GGCCGGUCCG----------GGgUAUUgAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 156557 0.79 0.464052
Target:  5'- cCUGGaCCGGGCCCUggAGCUGcuGGGCCg -3'
miRNA:   3'- -GGCC-GGUCCGGGGuaUUGAUu-UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.