miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 49561 0.75 0.633512
Target:  5'- gCCGGCCAGGCCCa---GCau--GGCCu -3'
miRNA:   3'- -GGCCGGUCCGGGguauUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 109583 0.76 0.592399
Target:  5'- gCCGGCUAGGCCaCCcgGGCaGGAcGCCg -3'
miRNA:   3'- -GGCCGGUCCGG-GGuaUUGaUUUcUGG- -5'
28982 5' -53 NC_006146.1 + 46327 0.79 0.464052
Target:  5'- cUCGGCCGGGCuucugaccagCCgGUAGgUGAGGACCg -3'
miRNA:   3'- -GGCCGGUCCG----------GGgUAUUgAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 21881 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 46615 0.74 0.715128
Target:  5'- gUCGGCCAGGUcuUCCAUcagGGCcuUGGGGGCCg -3'
miRNA:   3'- -GGCCGGUCCG--GGGUA---UUG--AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 21838 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 99662 0.76 0.582176
Target:  5'- cCCcGCCAGGCCCCAgGAgUu--GACCa -3'
miRNA:   3'- -GGcCGGUCCGGGGUaUUgAuuuCUGG- -5'
28982 5' -53 NC_006146.1 + 18803 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 18760 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 15725 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 98556 0.76 0.592399
Target:  5'- gCCGGuCCAGGgCCCA-AGC-GAAGGCCu -3'
miRNA:   3'- -GGCC-GGUCCgGGGUaUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 161838 0.75 0.643807
Target:  5'- -gGGCCAcGCCCCGUG---GGAGACCg -3'
miRNA:   3'- ggCCGGUcCGGGGUAUugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 170390 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 167595 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 102882 0.82 0.306814
Target:  5'- gUGGCCGGGCCCCAguuugcGCUuacGGACCu -3'
miRNA:   3'- gGCCGGUCCGGGGUau----UGAuu-UCUGG- -5'
28982 5' -53 NC_006146.1 + 24958 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 73431 0.73 0.734998
Target:  5'- -aGGCCGGGCCCCuUGGCaccgGAuGACa -3'
miRNA:   3'- ggCCGGUCCGGGGuAUUGa---UUuCUGg -5'
28982 5' -53 NC_006146.1 + 56129 0.74 0.715128
Target:  5'- gUGGCCgcGGGCCCCGaGACcgAGAGcACCu -3'
miRNA:   3'- gGCCGG--UCCGGGGUaUUGa-UUUC-UGG- -5'
28982 5' -53 NC_006146.1 + 156060 0.75 0.674603
Target:  5'- cUCGGCCucccgcGGCCCCG-GGCccGAGACCg -3'
miRNA:   3'- -GGCCGGu-----CCGGGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 24916 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.