miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28996 3' -51.5 NC_006146.1 + 30250 1.1 0.006358
Target:  5'- aAUUGGCCGCAAAAAGGGCUGUAGAGGg -3'
miRNA:   3'- -UAACCGGCGUUUUUCCCGACAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 128440 0.8 0.438721
Target:  5'- --gGGCCGCAGAccGGGCg--GGAGGg -3'
miRNA:   3'- uaaCCGGCGUUUuuCCCGacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 99004 0.77 0.555025
Target:  5'- --aGGCCGCGcgcAGGAGGGUccgcgugacggccgUGUAGAGGc -3'
miRNA:   3'- uaaCCGGCGU---UUUUCCCG--------------ACAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 104212 0.76 0.621424
Target:  5'- --gGGCCGCAAGccGAGGGUUcagGGAGGu -3'
miRNA:   3'- uaaCCGGCGUUU--UUCCCGAca-UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 53538 0.76 0.632048
Target:  5'- --aGGCCGCGAggaccGAGGGGCUucUGGGGGu -3'
miRNA:   3'- uaaCCGGCGUU-----UUUCCCGAc-AUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 114757 0.75 0.663884
Target:  5'- --cGGCCGCGGGGAGGGCUcucgGUcucGGGGc -3'
miRNA:   3'- uaaCCGGCGUUUUUCCCGA----CAu--CUCC- -5'
28996 3' -51.5 NC_006146.1 + 39841 0.75 0.705899
Target:  5'- --cGGCCGCAcagugggccgGcgGGGGCUGUgugcccgggGGAGGa -3'
miRNA:   3'- uaaCCGGCGU----------UuuUCCCGACA---------UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 170106 0.74 0.716259
Target:  5'- --gGcGCCGCAGGGGGGGCcGgcGGGGc -3'
miRNA:   3'- uaaC-CGGCGUUUUUCCCGaCauCUCC- -5'
28996 3' -51.5 NC_006146.1 + 89934 0.74 0.726542
Target:  5'- cGUUGGCUGCAAAGGuGGCacUGGAGGa -3'
miRNA:   3'- -UAACCGGCGUUUUUcCCGacAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 167291 0.74 0.74583
Target:  5'- -aUGGCCgGCGGGAGGGGCcggcgccUGcAGGGGg -3'
miRNA:   3'- uaACCGG-CGUUUUUCCCG-------ACaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 168223 0.74 0.74583
Target:  5'- -aUGGCCgGCGGGAGGGGCcggcgccUGcAGGGGg -3'
miRNA:   3'- uaACCGG-CGUUUUUCCCG-------ACaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 169155 0.74 0.74583
Target:  5'- -aUGGCCgGCGGGAGGGGCcggcgccUGcAGGGGg -3'
miRNA:   3'- uaACCGG-CGUUUUUCCCG-------ACaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 156705 0.74 0.746835
Target:  5'- -cUGGCCugccaggggGCAAAGGGGGCUc-AGAGGg -3'
miRNA:   3'- uaACCGG---------CGUUUUUCCCGAcaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 153628 0.74 0.746835
Target:  5'- -cUGGCCugccaggggGCAAAGGGGGCUc-AGAGGg -3'
miRNA:   3'- uaACCGG---------CGUUUUUCCCGAcaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 147472 0.74 0.746835
Target:  5'- -cUGGCCugccaggggGCAAAGGGGGCUc-AGAGGg -3'
miRNA:   3'- uaACCGG---------CGUUUUUCCCGAcaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 150550 0.74 0.746835
Target:  5'- -cUGGCCugccaggggGCAAAGGGGGCUc-AGAGGg -3'
miRNA:   3'- uaACCGG---------CGUUUUUCCCGAcaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 141316 0.74 0.746835
Target:  5'- -cUGGCCugccaggggGCAAAGGGGGCUc-AGAGGg -3'
miRNA:   3'- uaACCGG---------CGUUUUUCCCGAcaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 144394 0.74 0.746835
Target:  5'- -cUGGCCugccaggggGCAAAGGGGGCUc-AGAGGg -3'
miRNA:   3'- uaACCGG---------CGUUUUUCCCGAcaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 60467 0.73 0.766694
Target:  5'- --aGGCCGCGGGGAGcGGUg--AGAGGc -3'
miRNA:   3'- uaaCCGGCGUUUUUC-CCGacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 83365 0.73 0.786038
Target:  5'- -aUGGCCGuCAugGAGGGCa-UGGAGGc -3'
miRNA:   3'- uaACCGGC-GUuuUUCCCGacAUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.