miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28996 3' -51.5 NC_006146.1 + 30250 1.1 0.006358
Target:  5'- aAUUGGCCGCAAAAAGGGCUGUAGAGGg -3'
miRNA:   3'- -UAACCGGCGUUUUUCCCGACAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 51281 0.71 0.894032
Target:  5'- ---aGCCGCuuGAGGGGGCUGaGGAGu -3'
miRNA:   3'- uaacCGGCGu-UUUUCCCGACaUCUCc -5'
28996 3' -51.5 NC_006146.1 + 51341 0.71 0.894032
Target:  5'- ---aGCCGCuuGAGGGGGCUGaGGAGu -3'
miRNA:   3'- uaacCGGCGu-UUUUCCCGACaUCUCc -5'
28996 3' -51.5 NC_006146.1 + 53345 0.66 0.991404
Target:  5'- --cGGCCGC----GGGGCggcGU-GAGGu -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa--CAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 170106 0.74 0.716259
Target:  5'- --gGcGCCGCAGGGGGGGCcGgcGGGGc -3'
miRNA:   3'- uaaC-CGGCGUUUUUCCCGaCauCUCC- -5'
28996 3' -51.5 NC_006146.1 + 89934 0.74 0.726542
Target:  5'- cGUUGGCUGCAAAGGuGGCacUGGAGGa -3'
miRNA:   3'- -UAACCGGCGUUUUUcCCGacAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 168223 0.74 0.74583
Target:  5'- -aUGGCCgGCGGGAGGGGCcggcgccUGcAGGGGg -3'
miRNA:   3'- uaACCGG-CGUUUUUCCCG-------ACaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 169155 0.74 0.74583
Target:  5'- -aUGGCCgGCGGGAGGGGCcggcgccUGcAGGGGg -3'
miRNA:   3'- uaACCGG-CGUUUUUCCCG-------ACaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 89793 0.72 0.826385
Target:  5'- -aUGGCCguggacgaggacgagGCAGAGgcgGGGGCguggagGUGGAGGa -3'
miRNA:   3'- uaACCGG---------------CGUUUU---UCCCGa-----CAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 51251 0.71 0.894032
Target:  5'- ---aGCCGCuuGAGGGGGCUGaGGAGu -3'
miRNA:   3'- uaacCGGCGu-UUUUCCCGACaUCUCc -5'
28996 3' -51.5 NC_006146.1 + 68325 0.72 0.840184
Target:  5'- --gGGCCGCGAGAGGauGGC-GUcGAGGa -3'
miRNA:   3'- uaaCCGGCGUUUUUC--CCGaCAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 44743 0.73 0.81391
Target:  5'- -gUGGCCGCG---GGcGGCUGUGGuugucGGGg -3'
miRNA:   3'- uaACCGGCGUuuuUC-CCGACAUC-----UCC- -5'
28996 3' -51.5 NC_006146.1 + 99004 0.77 0.555025
Target:  5'- --aGGCCGCGcgcAGGAGGGUccgcgugacggccgUGUAGAGGc -3'
miRNA:   3'- uaaCCGGCGU---UUUUCCCG--------------ACAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 153498 0.72 0.84937
Target:  5'- -aUGGCCGCugccgugcuucuGGaGGCUGUGGAuGGa -3'
miRNA:   3'- uaACCGGCGuuuu--------UC-CCGACAUCU-CC- -5'
28996 3' -51.5 NC_006146.1 + 104212 0.76 0.621424
Target:  5'- --gGGCCGCAAGccGAGGGUUcagGGAGGu -3'
miRNA:   3'- uaaCCGGCGUUU--UUCCCGAca-UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 159975 0.73 0.81391
Target:  5'- -gUGGCgCGCAGGAgcccgcaguuGGGGUcuggccuccUGUGGAGGg -3'
miRNA:   3'- uaACCG-GCGUUUU----------UCCCG---------ACAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 165780 0.71 0.864625
Target:  5'- -gUGGuuGCAGGAAGGGaag-GGGGGu -3'
miRNA:   3'- uaACCggCGUUUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 51311 0.71 0.894032
Target:  5'- ---aGCCGCuuGAGGGGGCUGaGGAGu -3'
miRNA:   3'- uaacCGGCGu-UUUUCCCGACaUCUCc -5'
28996 3' -51.5 NC_006146.1 + 53538 0.76 0.632048
Target:  5'- --aGGCCGCGAggaccGAGGGGCUucUGGGGGu -3'
miRNA:   3'- uaaCCGGCGUU-----UUUCCCGAc-AUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 167291 0.74 0.74583
Target:  5'- -aUGGCCgGCGGGAGGGGCcggcgccUGcAGGGGg -3'
miRNA:   3'- uaACCGG-CGUUUUUCCCG-------ACaUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.