miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28996 3' -51.5 NC_006146.1 + 5238 0.66 0.990157
Target:  5'- --cGGCCuC----GGGGCUGUGGGGu -3'
miRNA:   3'- uaaCCGGcGuuuuUCCCGACAUCUCc -5'
28996 3' -51.5 NC_006146.1 + 12987 0.66 0.987243
Target:  5'- --cGGCCuaGGcccGGGgaGUGGAGGg -3'
miRNA:   3'- uaaCCGGcgUUuuuCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 14585 0.67 0.981034
Target:  5'- gGUUGGCUGCGccacgucuaucuuuAGAGGGGaaa-AGAGGa -3'
miRNA:   3'- -UAACCGGCGU--------------UUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 14788 0.67 0.979468
Target:  5'- uGUUGGCgGCu-GAGGGGaaGgAGAGGc -3'
miRNA:   3'- -UAACCGgCGuuUUUCCCgaCaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 15057 0.69 0.930703
Target:  5'- --gGGCCuGCGAGGAGGcaCUGgcGGGGg -3'
miRNA:   3'- uaaCCGG-CGUUUUUCCc-GACauCUCC- -5'
28996 3' -51.5 NC_006146.1 + 15716 0.68 0.961898
Target:  5'- -cUGGCCGaggAGAGGGGGCUGUu---- -3'
miRNA:   3'- uaACCGGCg--UUUUUCCCGACAucucc -5'
28996 3' -51.5 NC_006146.1 + 16065 0.66 0.987243
Target:  5'- --cGGCCuaGGcccGGGgaGUGGAGGg -3'
miRNA:   3'- uaaCCGGcgUUuuuCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 17663 0.67 0.981034
Target:  5'- gGUUGGCUGCGccacgucuaucuuuAGAGGGGaaa-AGAGGa -3'
miRNA:   3'- -UAACCGGCGU--------------UUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 19143 0.66 0.987243
Target:  5'- --cGGCCuaGGcccGGGgaGUGGAGGg -3'
miRNA:   3'- uaaCCGGcgUUuuuCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 20741 0.67 0.981034
Target:  5'- gGUUGGCUGCGccacgucuaucuuuAGAGGGGaaa-AGAGGa -3'
miRNA:   3'- -UAACCGGCGU--------------UUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 22221 0.66 0.987243
Target:  5'- --cGGCCuaGGcccGGGgaGUGGAGGg -3'
miRNA:   3'- uaaCCGGcgUUuuuCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 22295 0.71 0.864625
Target:  5'- -gUGGCaUGCAAAGugccucuuGGGCUGcAGAGGc -3'
miRNA:   3'- uaACCG-GCGUUUUu-------CCCGACaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 23819 0.67 0.981034
Target:  5'- gGUUGGCUGCGccacgucuaucuuuAGAGGGGaaa-AGAGGa -3'
miRNA:   3'- -UAACCGGCGU--------------UUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 23980 0.69 0.940874
Target:  5'- --gGaGCCGgAGAGGGGGCgaaAGAGGa -3'
miRNA:   3'- uaaC-CGGCgUUUUUCCCGacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 25299 0.66 0.987243
Target:  5'- --cGGCCuaGGcccGGGgaGUGGAGGg -3'
miRNA:   3'- uaaCCGGcgUUuuuCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 26897 0.67 0.981034
Target:  5'- gGUUGGCUGCGccacgucuaucuuuAGAGGGGaaa-AGAGGa -3'
miRNA:   3'- -UAACCGGCGU--------------UUUUCCCgacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 28377 0.66 0.987243
Target:  5'- --cGGCCuaGGcccGGGgaGUGGAGGg -3'
miRNA:   3'- uaaCCGGcgUUuuuCCCgaCAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 30250 1.1 0.006358
Target:  5'- aAUUGGCCGCAAAAAGGGCUGUAGAGGg -3'
miRNA:   3'- -UAACCGGCGUUUUUCCCGACAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 32168 0.69 0.950027
Target:  5'- --aGGCaacCGUAAGGAGGGggggGUAGGGGg -3'
miRNA:   3'- uaaCCG---GCGUUUUUCCCga--CAUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 33213 0.66 0.990157
Target:  5'- --aGGCCGgAGGGggagccgggauGGGGCUGggguuccGGGGGu -3'
miRNA:   3'- uaaCCGGCgUUUU-----------UCCCGACa------UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.