miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 3' -56.7 NC_006146.1 + 32088 1.11 0.002211
Target:  5'- gGCGCCCAAUAGCUCACCAACCCCGGGc -3'
miRNA:   3'- -CGCGGGUUAUCGAGUGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 30219 0.81 0.219933
Target:  5'- uGCGCCCGccgGGCUgGCCGgauACCCCGGa -3'
miRNA:   3'- -CGCGGGUua-UCGAgUGGU---UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 101266 0.79 0.26579
Target:  5'- cGgGCCCAuUAGC-CGCCcccaguACCCCGGGg -3'
miRNA:   3'- -CgCGGGUuAUCGaGUGGu-----UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 160864 0.78 0.298209
Target:  5'- cCGUCUGGccAGCUCACCuGCCCCGGGu -3'
miRNA:   3'- cGCGGGUUa-UCGAGUGGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 107252 0.78 0.298209
Target:  5'- -aGCCCAccUAGUUCAUCAcCCCCGGGu -3'
miRNA:   3'- cgCGGGUu-AUCGAGUGGUuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 142755 0.78 0.305049
Target:  5'- gGCGCCCGccGGCU--CCAACCUCGGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAguGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 148911 0.78 0.305049
Target:  5'- gGCGCCCGccGGCU--CCAACCUCGGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAguGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 115905 0.78 0.305049
Target:  5'- cCGCCCGGggGGCUUccgGCC-ACCCCGGGu -3'
miRNA:   3'- cGCGGGUUa-UCGAG---UGGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 151989 0.78 0.305049
Target:  5'- gGCGCCCGccGGCU--CCAACCUCGGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAguGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 145833 0.78 0.305049
Target:  5'- gGCGCCCGccGGCU--CCAACCUCGGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAguGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 155067 0.78 0.305049
Target:  5'- gGCGCCCGccGGCU--CCAACCUCGGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAguGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 158146 0.78 0.305049
Target:  5'- gGCGCCCGccGGCU--CCAACCUCGGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAguGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 129288 0.78 0.31201
Target:  5'- uGCGCCCGGgcccAGCggACCAGCCCCccGGGc -3'
miRNA:   3'- -CGCGGGUUa---UCGagUGGUUGGGG--CCC- -5'
29002 3' -56.7 NC_006146.1 + 114837 0.76 0.380023
Target:  5'- -gGCCCGGUGGgaCGCCuuCCCgCGGGa -3'
miRNA:   3'- cgCGGGUUAUCgaGUGGuuGGG-GCCC- -5'
29002 3' -56.7 NC_006146.1 + 55033 0.76 0.388167
Target:  5'- uCGCCCAGgccaAGCUCAagauucACCCCGGGg -3'
miRNA:   3'- cGCGGGUUa---UCGAGUggu---UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 59012 0.76 0.421866
Target:  5'- -aGCCCu---GCUCACCAgcacuGCCCCGaGGg -3'
miRNA:   3'- cgCGGGuuauCGAGUGGU-----UGGGGC-CC- -5'
29002 3' -56.7 NC_006146.1 + 74639 0.75 0.430562
Target:  5'- gGCGCCCccuGUAGUagGCCAcguacucgucGCUCCGGGg -3'
miRNA:   3'- -CGCGGGu--UAUCGagUGGU----------UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 41866 0.75 0.448265
Target:  5'- uGgGCCCAGcucgGGCUgCGCCGuGCCCCGGa -3'
miRNA:   3'- -CgCGGGUUa---UCGA-GUGGU-UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 67284 0.75 0.466364
Target:  5'- cGUGCCagcuugcgAGCUcCGCCAGCuCCCGGGc -3'
miRNA:   3'- -CGCGGguua----UCGA-GUGGUUG-GGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 156373 0.74 0.484833
Target:  5'- aGgGCCCGGUccaGGCUCuCCAGCCCCa-- -3'
miRNA:   3'- -CgCGGGUUA---UCGAGuGGUUGGGGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.