miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 3' -56.7 NC_006146.1 + 425 0.67 0.875845
Target:  5'- -aGCCCccc-GCUCGCC--CCUCGGGu -3'
miRNA:   3'- cgCGGGuuauCGAGUGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 1142 0.68 0.82987
Target:  5'- gGUGCCCccgcgaGGgUCcCCGggccGCCCCGGGg -3'
miRNA:   3'- -CGCGGGuua---UCgAGuGGU----UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 1183 0.66 0.908476
Target:  5'- cGCGCCgAucugAGCgccCACCcgugaggggGAgCCCGGGa -3'
miRNA:   3'- -CGCGGgUua--UCGa--GUGG---------UUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 1311 0.73 0.531462
Target:  5'- cGCGCCCccucaGGCccCACCcgacgcgcgcucgGGCCCCGGGg -3'
miRNA:   3'- -CGCGGGuua--UCGa-GUGG-------------UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 1356 0.67 0.875845
Target:  5'- -aGCCCccc-GCUCGCC--CCUCGGGu -3'
miRNA:   3'- cgCGGGuuauCGAGUGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 2074 0.68 0.82987
Target:  5'- gGUGCCCccgcgaGGgUCcCCGggccGCCCCGGGg -3'
miRNA:   3'- -CGCGGGuua---UCgAGuGGU----UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 2115 0.66 0.908476
Target:  5'- cGCGCCgAucugAGCgccCACCcgugaggggGAgCCCGGGa -3'
miRNA:   3'- -CGCGGgUua--UCGa--GUGG---------UUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 2243 0.73 0.531462
Target:  5'- cGCGCCCccucaGGCccCACCcgacgcgcgcucgGGCCCCGGGg -3'
miRNA:   3'- -CGCGGGuua--UCGa-GUGG-------------UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 2288 0.67 0.875845
Target:  5'- -aGCCCccc-GCUCGCC--CCUCGGGu -3'
miRNA:   3'- cgCGGGuuauCGAGUGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 2382 0.67 0.887553
Target:  5'- gGCGUCCGcgGGCUU-CCAGagggcucuguugguCCCCGGc -3'
miRNA:   3'- -CGCGGGUuaUCGAGuGGUU--------------GGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 3006 0.68 0.82987
Target:  5'- gGUGCCCccgcgaGGgUCcCCGggccGCCCCGGGg -3'
miRNA:   3'- -CGCGGGuua---UCgAGuGGU----UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 3047 0.66 0.908476
Target:  5'- cGCGCCgAucugAGCgccCACCcgugaggggGAgCCCGGGa -3'
miRNA:   3'- -CGCGGgUua--UCGa--GUGG---------UUgGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 3175 0.73 0.531462
Target:  5'- cGCGCCCccucaGGCccCACCcgacgcgcgcucgGGCCCCGGGg -3'
miRNA:   3'- -CGCGGGuua--UCGa-GUGG-------------UUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 3220 0.67 0.875845
Target:  5'- -aGCCCccc-GCUCGCC--CCUCGGGu -3'
miRNA:   3'- cgCGGGuuauCGAGUGGuuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 4936 0.68 0.838003
Target:  5'- gGUGgCCGu--GCUCugU-GCCCCGGGg -3'
miRNA:   3'- -CGCgGGUuauCGAGugGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 5204 0.68 0.816498
Target:  5'- uGgGCCUGGgggAGCUaggggugcagguccuUGCCGGCCUCGGGg -3'
miRNA:   3'- -CgCGGGUUa--UCGA---------------GUGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 9147 0.74 0.490442
Target:  5'- gGCGCCCccucggaccucAGC-CGCCAcCCCCGGGc -3'
miRNA:   3'- -CGCGGGuua--------UCGaGUGGUuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 9477 0.66 0.908476
Target:  5'- cGCGCCCucUGGC--AUCAGCCaCUGGa -3'
miRNA:   3'- -CGCGGGuuAUCGagUGGUUGG-GGCCc -5'
29002 3' -56.7 NC_006146.1 + 9782 0.68 0.80446
Target:  5'- uGCGCCCAAUgAGCgUCugCuccuCUCCaGGGc -3'
miRNA:   3'- -CGCGGGUUA-UCG-AGugGuu--GGGG-CCC- -5'
29002 3' -56.7 NC_006146.1 + 10297 0.67 0.861299
Target:  5'- aUGCCa---GGCg-GCCGACCUCGGGg -3'
miRNA:   3'- cGCGGguuaUCGagUGGUUGGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.