miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29002 3' -56.7 NC_006146.1 + 32088 1.11 0.002211
Target:  5'- gGCGCCCAAUAGCUCACCAACCCCGGGc -3'
miRNA:   3'- -CGCGGGUUAUCGAGUGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 47014 0.71 0.641672
Target:  5'- aGCgGCCCGGUcGGaCUCGCgGgcGCCCUGGGu -3'
miRNA:   3'- -CG-CGGGUUA-UC-GAGUGgU--UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 79004 0.71 0.651701
Target:  5'- uGCGCCCAcUAGUgccaacUC-CCGACCCgcaaGGGg -3'
miRNA:   3'- -CGCGGGUuAUCG------AGuGGUUGGGg---CCC- -5'
29002 3' -56.7 NC_006146.1 + 132734 0.66 0.919963
Target:  5'- uGUcCCCAGUAGC-C-CCGguuCUCCGGGg -3'
miRNA:   3'- -CGcGGGUUAUCGaGuGGUu--GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 156373 0.74 0.484833
Target:  5'- aGgGCCCGGUccaGGCUCuCCAGCCCCa-- -3'
miRNA:   3'- -CgCGGGUUA---UCGAGuGGUUGGGGccc -5'
29002 3' -56.7 NC_006146.1 + 9147 0.74 0.490442
Target:  5'- gGCGCCCccucggaccucAGC-CGCCAcCCCCGGGc -3'
miRNA:   3'- -CGCGGGuua--------UCGaGUGGUuGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 75689 0.73 0.551948
Target:  5'- uGCGCUCugguacucuUGGCagACC-ACCCCGGGg -3'
miRNA:   3'- -CGCGGGuu-------AUCGagUGGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 162378 0.73 0.561788
Target:  5'- -aGCCCcuUGGCgCGCCcGCgCCCGGGa -3'
miRNA:   3'- cgCGGGuuAUCGaGUGGuUG-GGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 148489 0.72 0.6216
Target:  5'- -gGCCaccUGGgUCACCAcgguggACCCCGGGg -3'
miRNA:   3'- cgCGGguuAUCgAGUGGU------UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 97845 0.72 0.631636
Target:  5'- aCGaCCUggagGAgggGGC-CGCCGACCCCGGGc -3'
miRNA:   3'- cGC-GGG----UUa--UCGaGUGGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 158240 0.72 0.627621
Target:  5'- aGCGUCUggUAGUggcccuugagccacUCGgggggacucuggcCCAGCCCCGGGu -3'
miRNA:   3'- -CGCGGGuuAUCG--------------AGU-------------GGUUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 51810 0.72 0.611572
Target:  5'- gGCGCCa---AGC-CACCcguuCCCCGGGg -3'
miRNA:   3'- -CGCGGguuaUCGaGUGGuu--GGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 30219 0.81 0.219933
Target:  5'- uGCGCCCGccgGGCUgGCCGgauACCCCGGa -3'
miRNA:   3'- -CGCGGGUua-UCGAgUGGU---UGGGGCCc -5'
29002 3' -56.7 NC_006146.1 + 127929 0.72 0.629628
Target:  5'- uGCuGCCCAcaaacuccgcGCUCAgCGugCCCGGGg -3'
miRNA:   3'- -CG-CGGGUuau-------CGAGUgGUugGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 160864 0.78 0.298209
Target:  5'- cCGUCUGGccAGCUCACCuGCCCCGGGu -3'
miRNA:   3'- cGCGGGUUa-UCGAGUGGuUGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 41579 0.72 0.601558
Target:  5'- cCGCCUAcUGGCUgGCCGaggcggagagGCCCgGGGg -3'
miRNA:   3'- cGCGGGUuAUCGAgUGGU----------UGGGgCCC- -5'
29002 3' -56.7 NC_006146.1 + 146817 0.72 0.631636
Target:  5'- cGCGuCCCAGgcgaGGCcgCGCCAGCguagagCCCGGGc -3'
miRNA:   3'- -CGC-GGGUUa---UCGa-GUGGUUG------GGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 33118 0.71 0.641672
Target:  5'- cCGCCgGcgGGUUCGCCGggccgcugccccGCUCCGGGu -3'
miRNA:   3'- cGCGGgUuaUCGAGUGGU------------UGGGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 67284 0.75 0.466364
Target:  5'- cGUGCCagcuugcgAGCUcCGCCAGCuCCCGGGc -3'
miRNA:   3'- -CGCGGguua----UCGA-GUGGUUG-GGGCCC- -5'
29002 3' -56.7 NC_006146.1 + 109036 0.74 0.494198
Target:  5'- cGCGCCCccGUGGag-ACCucuGCCCCGGGa -3'
miRNA:   3'- -CGCGGGu-UAUCgagUGGu--UGGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.