Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29002 | 5' | -55.3 | NC_006146.1 | + | 167478 | 0.69 | 0.788873 |
Target: 5'- -gCCCAGCACGUAGUAuuGGcacccuGCCAc -3' miRNA: 3'- gaGGGUCGUGCAUCGU--CCaau---CGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 157604 | 0.69 | 0.806983 |
Target: 5'- -gCCCAGCACGUGG-GGG-UAGUCGc -3' miRNA: 3'- gaGGGUCGUGCAUCgUCCaAUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 108321 | 0.69 | 0.815801 |
Target: 5'- aUCuCCAGCGag-AGCAGGUUGGCa-- -3' miRNA: 3'- gAG-GGUCGUgcaUCGUCCAAUCGguc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 23964 | 0.69 | 0.82445 |
Target: 5'- -cCCCGGguCG-GGUGGGggAGCCGGa -3' miRNA: 3'- gaGGGUCguGCaUCGUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 169510 | 0.68 | 0.832921 |
Target: 5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3' miRNA: 3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 170441 | 0.68 | 0.832921 |
Target: 5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3' miRNA: 3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 49829 | 0.68 | 0.832921 |
Target: 5'- -aUCUGGCACGUGugccGCAGGcgGGUCAGg -3' miRNA: 3'- gaGGGUCGUGCAU----CGUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 123679 | 0.68 | 0.832921 |
Target: 5'- --gCCAGCucaagauCGUGGCGGaGgcGGCCAGg -3' miRNA: 3'- gagGGUCGu------GCAUCGUC-CaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 168578 | 0.68 | 0.832921 |
Target: 5'- -gCCCGGCGCGUGcCGGGggAcCCGGg -3' miRNA: 3'- gaGGGUCGUGCAUcGUCCaaUcGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 43585 | 0.68 | 0.832921 |
Target: 5'- uUCCCGGggaGCGgGGCGGGa-GGCCGGg -3' miRNA: 3'- gAGGGUCg--UGCaUCGUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 9069 | 0.68 | 0.841207 |
Target: 5'- uCUCCCacGGgGCGUGGCccaaaAGGaaAGCCGGg -3' miRNA: 3'- -GAGGG--UCgUGCAUCG-----UCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 21972 | 0.68 | 0.857193 |
Target: 5'- aUUCCAGCcgagaaGUGGCGGGgaAGCUGGu -3' miRNA: 3'- gAGGGUCGug----CAUCGUCCaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 110094 | 0.68 | 0.864879 |
Target: 5'- gUCCCuGCuuAUGUAGUu-GUUGGCCAGg -3' miRNA: 3'- gAGGGuCG--UGCAUCGucCAAUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 41077 | 0.67 | 0.872353 |
Target: 5'- --aCgGGgGCGUGGCGGGUgGGCCGc -3' miRNA: 3'- gagGgUCgUGCAUCGUCCAaUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 119809 | 0.67 | 0.88664 |
Target: 5'- aUCCggCAGCGCaaGGCGGGggaccGGCCAGa -3' miRNA: 3'- gAGG--GUCGUGcaUCGUCCaa---UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 123617 | 0.67 | 0.889389 |
Target: 5'- gUCCCGGCugcaggACGUucuGCAGGaccucgucacccgGGCCAGg -3' miRNA: 3'- gAGGGUCG------UGCAu--CGUCCaa-----------UCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 113810 | 0.67 | 0.893443 |
Target: 5'- gUCgCGGgGCuGUcguacAGCAGGUUGGCCAu -3' miRNA: 3'- gAGgGUCgUG-CA-----UCGUCCAAUCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 99554 | 0.67 | 0.893443 |
Target: 5'- uUCCCacuGGCACcccAGCAGGUggaaaGGCCAa -3' miRNA: 3'- gAGGG---UCGUGca-UCGUCCAa----UCGGUc -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 115360 | 0.67 | 0.900014 |
Target: 5'- uUCCUGGCcgGCGUGGCGGcggAGCUGGa -3' miRNA: 3'- gAGGGUCG--UGCAUCGUCcaaUCGGUC- -5' |
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29002 | 5' | -55.3 | NC_006146.1 | + | 167912 | 0.67 | 0.900014 |
Target: 5'- -cCCCAGCAUGac-CAGGUacUGGCCGu -3' miRNA: 3'- gaGGGUCGUGCaucGUCCA--AUCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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