miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 44453 1.07 0.002921
Target:  5'- cAUAGCCUCCCGUGGAAUCCCACGCAGg -3'
miRNA:   3'- -UAUCGGAGGGCACCUUAGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 38142 0.74 0.421025
Target:  5'- -cGGCCUCUgacaCGUGGAuggggguguucAUCUCACGCAGa -3'
miRNA:   3'- uaUCGGAGG----GCACCU-----------UAGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 45561 0.73 0.4569
Target:  5'- cUGGCCUCCgCGaGGAG-CUCGCGCAGc -3'
miRNA:   3'- uAUCGGAGG-GCaCCUUaGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 941 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 3737 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 2805 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 1873 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 137977 0.72 0.543014
Target:  5'- -gGGCCUCCCG-GGGG-CCCG-GCGGg -3'
miRNA:   3'- uaUCGGAGGGCaCCUUaGGGUgCGUC- -5'
29011 5' -57.2 NC_006146.1 + 9046 0.72 0.543014
Target:  5'- -gAGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uaUCGGAg----GGCACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 9113 0.72 0.543014
Target:  5'- -gAGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uaUCGGAg----GGCACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 46679 0.72 0.55195
Target:  5'- uUGGCCUCCaCGUcggaccaGGAGUCCCAguaagagucggcCGCGGc -3'
miRNA:   3'- uAUCGGAGG-GCA-------CCUUAGGGU------------GCGUC- -5'
29011 5' -57.2 NC_006146.1 + 160003 0.72 0.562931
Target:  5'- cUGGCCUCCUGUGGAGggCCUugACGUu- -3'
miRNA:   3'- uAUCGGAGGGCACCUUa-GGG--UGCGuc -5'
29011 5' -57.2 NC_006146.1 + 103708 0.72 0.562931
Target:  5'- -cGGCCacggCCaGUGGAAUCCCAaggaGCAGu -3'
miRNA:   3'- uaUCGGa---GGgCACCUUAGGGUg---CGUC- -5'
29011 5' -57.2 NC_006146.1 + 115522 0.71 0.583039
Target:  5'- cUGGCCUcggugcCCCG-GGcGUCCCGCGCGc -3'
miRNA:   3'- uAUCGGA------GGGCaCCuUAGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 128035 0.7 0.633797
Target:  5'- --cGCCUCCCaccaGUGGAA-CCUGCGCGu -3'
miRNA:   3'- uauCGGAGGG----CACCUUaGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 125569 0.7 0.633797
Target:  5'- -cGGCCUCCCcc-GAAUCCC-CGCAa -3'
miRNA:   3'- uaUCGGAGGGcacCUUAGGGuGCGUc -5'
29011 5' -57.2 NC_006146.1 + 96649 0.69 0.684512
Target:  5'- uUGGCCagCCCG-GGGAgacggCCGCGCAGg -3'
miRNA:   3'- uAUCGGa-GGGCaCCUUag---GGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 117501 0.69 0.684512
Target:  5'- uUGGCCUCCUGgaggccagGGAauagGUCUCACGCc- -3'
miRNA:   3'- uAUCGGAGGGCa-------CCU----UAGGGUGCGuc -5'
29011 5' -57.2 NC_006146.1 + 63098 0.69 0.694561
Target:  5'- gGUGGCCUCgCUGaaGGAGaCCCuGCGCAGg -3'
miRNA:   3'- -UAUCGGAG-GGCa-CCUUaGGG-UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 8914 0.68 0.743851
Target:  5'- --uGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uauCGGAg----GGCACCUU------AGGGUGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.