Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29011 | 5' | -57.2 | NC_006146.1 | + | 44453 | 1.07 | 0.002921 |
Target: 5'- cAUAGCCUCCCGUGGAAUCCCACGCAGg -3' miRNA: 3'- -UAUCGGAGGGCACCUUAGGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 167600 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 169464 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 8721 | 0.66 | 0.880042 |
Target: 5'- -cAGCCUacggggaCCGUGGAuagCCUAUGCu- -3' miRNA: 3'- uaUCGGAg------GGCACCUua-GGGUGCGuc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 46679 | 0.72 | 0.55195 |
Target: 5'- uUGGCCUCCaCGUcggaccaGGAGUCCCAguaagagucggcCGCGGc -3' miRNA: 3'- uAUCGGAGG-GCA-------CCUUAGGGU------------GCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 160003 | 0.72 | 0.562931 |
Target: 5'- cUGGCCUCCUGUGGAGggCCUugACGUu- -3' miRNA: 3'- uAUCGGAGGGCACCUUa-GGG--UGCGuc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 96649 | 0.69 | 0.684512 |
Target: 5'- uUGGCCagCCCG-GGGAgacggCCGCGCAGg -3' miRNA: 3'- uAUCGGa-GGGCaCCUUag---GGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 117501 | 0.69 | 0.684512 |
Target: 5'- uUGGCCUCCUGgaggccagGGAauagGUCUCACGCc- -3' miRNA: 3'- uAUCGGAGGGCa-------CCU----UAGGGUGCGuc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 99834 | 0.68 | 0.752499 |
Target: 5'- -gGGCCU-CgGUGGAAUaggugaagacgucCCCGCGCGGc -3' miRNA: 3'- uaUCGGAgGgCACCUUA-------------GGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 115747 | 0.67 | 0.797029 |
Target: 5'- cUGGCCUCCCGgcggcugacaugGGggUCCCgauaaacAUGgAGg -3' miRNA: 3'- uAUCGGAGGGCa-----------CCuuAGGG-------UGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 85496 | 0.68 | 0.781597 |
Target: 5'- cUGGUCUCCuCGUcGGGAUCCucCACGCc- -3' miRNA: 3'- uAUCGGAGG-GCA-CCUUAGG--GUGCGuc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 39331 | 0.68 | 0.743851 |
Target: 5'- cUGGCCUcCCCG-GGAAUCUCcUGCGa -3' miRNA: 3'- uAUCGGA-GGGCaCCUUAGGGuGCGUc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 38142 | 0.74 | 0.421025 |
Target: 5'- -cGGCCUCUgacaCGUGGAuggggguguucAUCUCACGCAGa -3' miRNA: 3'- uaUCGGAGG----GCACCU-----------UAGGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 56056 | 0.68 | 0.790724 |
Target: 5'- -cAGCCccUCCCGcgGGAaggcGUCCCAC-CGGg -3' miRNA: 3'- uaUCGG--AGGGCa-CCU----UAGGGUGcGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 45561 | 0.73 | 0.4569 |
Target: 5'- cUGGCCUCCgCGaGGAG-CUCGCGCAGc -3' miRNA: 3'- uAUCGGAGG-GCaCCUUaGGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 63098 | 0.69 | 0.694561 |
Target: 5'- gGUGGCCUCgCUGaaGGAGaCCCuGCGCAGg -3' miRNA: 3'- -UAUCGGAG-GGCa-CCUUaGGG-UGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 120497 | 0.68 | 0.790724 |
Target: 5'- ---uCCUgCCCGUGGAggcuauuuAUCCCGcCGCGGu -3' miRNA: 3'- uaucGGA-GGGCACCU--------UAGGGU-GCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 168532 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 137977 | 0.72 | 0.543014 |
Target: 5'- -gGGCCUCCCG-GGGG-CCCG-GCGGg -3' miRNA: 3'- uaUCGGAGGGCaCCUUaGGGUgCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 128035 | 0.7 | 0.633797 |
Target: 5'- --cGCCUCCCaccaGUGGAA-CCUGCGCGu -3' miRNA: 3'- uauCGGAGGG----CACCUUaGGGUGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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