miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 9450 0.67 0.834071
Target:  5'- -cAGCCUaCCCGccccacgcgccuUGGGuUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGA-GGGC------------ACCUuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 46385 0.67 0.820648
Target:  5'- -aGGCC-CCCGUcccucgccaGGGccgagaccaggccgaGUCCCGCGUAGa -3'
miRNA:   3'- uaUCGGaGGGCA---------CCU---------------UAGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 169464 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 115747 0.67 0.797029
Target:  5'- cUGGCCUCCCGgcggcugacaugGGggUCCCgauaaacAUGgAGg -3'
miRNA:   3'- uAUCGGAGGGCa-----------CCuuAGGG-------UGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 5068 0.66 0.857964
Target:  5'- -gGGCUggCCGuUGGAGgcgUCCACGCGGc -3'
miRNA:   3'- uaUCGGagGGC-ACCUUa--GGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 142473 0.67 0.817223
Target:  5'- -gGGgCUCCCGUGGAGUgaCCCGgagcCGCc- -3'
miRNA:   3'- uaUCgGAGGGCACCUUA--GGGU----GCGuc -5'
29011 5' -57.2 NC_006146.1 + 120497 0.68 0.790724
Target:  5'- ---uCCUgCCCGUGGAggcuauuuAUCCCGcCGCGGu -3'
miRNA:   3'- uaucGGA-GGGCACCU--------UAGGGU-GCGUC- -5'
29011 5' -57.2 NC_006146.1 + 55138 0.66 0.850193
Target:  5'- -cGGCCUCCgGUGGGggCacgauaaagaUGCGCAGg -3'
miRNA:   3'- uaUCGGAGGgCACCUuaGg---------GUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 56056 0.68 0.790724
Target:  5'- -cAGCCccUCCCGcgGGAaggcGUCCCAC-CGGg -3'
miRNA:   3'- uaUCGG--AGGGCa-CCU----UAGGGUGcGUC- -5'
29011 5' -57.2 NC_006146.1 + 168489 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 151192 0.66 0.857964
Target:  5'- -cGGCCUccuccCCCGUGGA--CCagaggACGCAGg -3'
miRNA:   3'- uaUCGGA-----GGGCACCUuaGGg----UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 144381 0.67 0.817223
Target:  5'- uGUGGCUgucuugCCUggguguGUGGggUCCCAgGCAa -3'
miRNA:   3'- -UAUCGGa-----GGG------CACCuuAGGGUgCGUc -5'
29011 5' -57.2 NC_006146.1 + 170395 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 168532 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 167600 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 85496 0.68 0.781597
Target:  5'- cUGGUCUCCuCGUcGGGAUCCucCACGCc- -3'
miRNA:   3'- uAUCGGAGG-GCA-CCUUAGG--GUGCGuc -5'
29011 5' -57.2 NC_006146.1 + 80548 0.66 0.872894
Target:  5'- -gAGCgUCCCGUGGua-CCCGagaccuaaugaGCAGg -3'
miRNA:   3'- uaUCGgAGGGCACCuuaGGGUg----------CGUC- -5'
29011 5' -57.2 NC_006146.1 + 41763 0.66 0.857964
Target:  5'- -gGGCUUCCCGccGGAggCCCuGCGCc- -3'
miRNA:   3'- uaUCGGAGGGCa-CCUuaGGG-UGCGuc -5'
29011 5' -57.2 NC_006146.1 + 117992 0.67 0.817223
Target:  5'- --cGCC-CCCG-GGGGg-CCACGCAGa -3'
miRNA:   3'- uauCGGaGGGCaCCUUagGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 941 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.