miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 46385 0.67 0.820648
Target:  5'- -aGGCC-CCCGUcccucgccaGGGccgagaccaggccgaGUCCCGCGUAGa -3'
miRNA:   3'- uaUCGGaGGGCA---------CCU---------------UAGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 46679 0.72 0.55195
Target:  5'- uUGGCCUCCaCGUcggaccaGGAGUCCCAguaagagucggcCGCGGc -3'
miRNA:   3'- uAUCGGAGG-GCA-------CCUUAGGGU------------GCGUC- -5'
29011 5' -57.2 NC_006146.1 + 55138 0.66 0.850193
Target:  5'- -cGGCCUCCgGUGGGggCacgauaaagaUGCGCAGg -3'
miRNA:   3'- uaUCGGAGGgCACCUuaGg---------GUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 55669 0.67 0.79971
Target:  5'- -gGGCCUCUCagcUGGGcUCCCugGguGa -3'
miRNA:   3'- uaUCGGAGGGc--ACCUuAGGGugCguC- -5'
29011 5' -57.2 NC_006146.1 + 56056 0.68 0.790724
Target:  5'- -cAGCCccUCCCGcgGGAaggcGUCCCAC-CGGg -3'
miRNA:   3'- uaUCGG--AGGGCa-CCU----UAGGGUGcGUC- -5'
29011 5' -57.2 NC_006146.1 + 63098 0.69 0.694561
Target:  5'- gGUGGCCUCgCUGaaGGAGaCCCuGCGCAGg -3'
miRNA:   3'- -UAUCGGAG-GGCa-CCUUaGGG-UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 68445 0.67 0.825734
Target:  5'- -cGGCCggCUCcUGGAAagCCUACGCAGa -3'
miRNA:   3'- uaUCGGa-GGGcACCUUa-GGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 71774 0.66 0.861016
Target:  5'- -gAGCC-CCUGUGGAGacgCCUgaggccggagggcagGCGCGGg -3'
miRNA:   3'- uaUCGGaGGGCACCUUa--GGG---------------UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 75695 0.67 0.825734
Target:  5'- --cGCCUCCC-UGGAGgagCUgcaGCGCAGg -3'
miRNA:   3'- uauCGGAGGGcACCUUa--GGg--UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 78801 0.66 0.857964
Target:  5'- -cAGCaauaCUCCC-UGGGAggCCCACGCGu -3'
miRNA:   3'- uaUCG----GAGGGcACCUUa-GGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 80548 0.66 0.872894
Target:  5'- -gAGCgUCCCGUGGua-CCCGagaccuaaugaGCAGg -3'
miRNA:   3'- uaUCGgAGGGCACCuuaGGGUg----------CGUC- -5'
29011 5' -57.2 NC_006146.1 + 85496 0.68 0.781597
Target:  5'- cUGGUCUCCuCGUcGGGAUCCucCACGCc- -3'
miRNA:   3'- uAUCGGAGG-GCA-CCUUAGG--GUGCGuc -5'
29011 5' -57.2 NC_006146.1 + 96649 0.69 0.684512
Target:  5'- uUGGCCagCCCG-GGGAgacggCCGCGCAGg -3'
miRNA:   3'- uAUCGGa-GGGCaCCUUag---GGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 99834 0.68 0.752499
Target:  5'- -gGGCCU-CgGUGGAAUaggugaagacgucCCCGCGCGGc -3'
miRNA:   3'- uaUCGGAgGgCACCUUA-------------GGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 100903 0.66 0.872894
Target:  5'- -gGGUCUCggCCGUGGggUCCC-CGa-- -3'
miRNA:   3'- uaUCGGAG--GGCACCuuAGGGuGCguc -5'
29011 5' -57.2 NC_006146.1 + 103708 0.72 0.562931
Target:  5'- -cGGCCacggCCaGUGGAAUCCCAaggaGCAGu -3'
miRNA:   3'- uaUCGGa---GGgCACCUUAGGGUg---CGUC- -5'
29011 5' -57.2 NC_006146.1 + 112801 0.66 0.872894
Target:  5'- --uGCCUCCCGUuGcgcCCCACGUAc -3'
miRNA:   3'- uauCGGAGGGCAcCuuaGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 115522 0.71 0.583039
Target:  5'- cUGGCCUcggugcCCCG-GGcGUCCCGCGCGc -3'
miRNA:   3'- uAUCGGA------GGGCaCCuUAGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 115747 0.67 0.797029
Target:  5'- cUGGCCUCCCGgcggcugacaugGGggUCCCgauaaacAUGgAGg -3'
miRNA:   3'- uAUCGGAGGGCa-----------CCuuAGGG-------UGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 117098 0.66 0.865533
Target:  5'- -cAGCCcCCCGcuaUGGAcg-CCGCGCGGg -3'
miRNA:   3'- uaUCGGaGGGC---ACCUuagGGUGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.