miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 941 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 1873 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 2805 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 3737 0.72 0.513597
Target:  5'- -cGGCCUCCCGUcccGAAggCCCugGCAc -3'
miRNA:   3'- uaUCGGAGGGCAc--CUUa-GGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 5068 0.66 0.857964
Target:  5'- -gGGCUggCCGuUGGAGgcgUCCACGCGGc -3'
miRNA:   3'- uaUCGGagGGC-ACCUUa--GGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 8721 0.66 0.880042
Target:  5'- -cAGCCUacggggaCCGUGGAuagCCUAUGCu- -3'
miRNA:   3'- uaUCGGAg------GGCACCUua-GGGUGCGuc -5'
29011 5' -57.2 NC_006146.1 + 8914 0.68 0.743851
Target:  5'- --uGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uauCGGAg----GGCACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 8968 0.67 0.837356
Target:  5'- -gGGUCUCCCagggugcuauccaccGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uaUCGGAGGG---------------CACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 9046 0.72 0.543014
Target:  5'- -gAGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uaUCGGAg----GGCACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 9113 0.72 0.543014
Target:  5'- -gAGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uaUCGGAg----GGCACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 9450 0.67 0.834071
Target:  5'- -cAGCCUaCCCGccccacgcgccuUGGGuUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGA-GGGC------------ACCUuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 24690 0.68 0.753455
Target:  5'- cAUGGCCgccgcuuacCCCGgaGGAG-CCCAUGCAGc -3'
miRNA:   3'- -UAUCGGa--------GGGCa-CCUUaGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 38142 0.74 0.421025
Target:  5'- -cGGCCUCUgacaCGUGGAuggggguguucAUCUCACGCAGa -3'
miRNA:   3'- uaUCGGAGG----GCACCU-----------UAGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 39331 0.68 0.743851
Target:  5'- cUGGCCUcCCCG-GGAAUCUCcUGCGa -3'
miRNA:   3'- uAUCGGA-GGGCaCCUUAGGGuGCGUc -5'
29011 5' -57.2 NC_006146.1 + 39403 0.67 0.834071
Target:  5'- -gGGCCcuuUCCCGgucGAUCCCugGCAc -3'
miRNA:   3'- uaUCGG---AGGGCaccUUAGGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 40401 0.66 0.872894
Target:  5'- aGUAGCCUCCCGcGGGGgcaaaguagCCACcCGGg -3'
miRNA:   3'- -UAUCGGAGGGCaCCUUag-------GGUGcGUC- -5'
29011 5' -57.2 NC_006146.1 + 40760 0.68 0.762953
Target:  5'- uUAGCCacuccccugUCCCGccUGaGggUCuCCACGCGGu -3'
miRNA:   3'- uAUCGG---------AGGGC--AC-CuuAG-GGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 41763 0.66 0.857964
Target:  5'- -gGGCUUCCCGccGGAggCCCuGCGCc- -3'
miRNA:   3'- uaUCGGAGGGCa-CCUuaGGG-UGCGuc -5'
29011 5' -57.2 NC_006146.1 + 44453 1.07 0.002921
Target:  5'- cAUAGCCUCCCGUGGAAUCCCACGCAGg -3'
miRNA:   3'- -UAUCGGAGGGCACCUUAGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 45561 0.73 0.4569
Target:  5'- cUGGCCUCCgCGaGGAG-CUCGCGCAGc -3'
miRNA:   3'- uAUCGGAGG-GCaCCUUaGGGUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.