miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 170395 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 170352 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 169464 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 169421 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 168532 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 168489 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 167600 0.67 0.814637
Target:  5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3'
miRNA:   3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 167557 0.66 0.842227
Target:  5'- -aGGCCaCgUGUGGAggCCCGCGgAGa -3'
miRNA:   3'- uaUCGGaGgGCACCUuaGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 161838 0.68 0.753455
Target:  5'- -gGGCCacgcCCCGUGGGAgaccggCuCCACGguGg -3'
miRNA:   3'- uaUCGGa---GGGCACCUUa-----G-GGUGCguC- -5'
29011 5' -57.2 NC_006146.1 + 160003 0.72 0.562931
Target:  5'- cUGGCCUCCUGUGGAGggCCUugACGUu- -3'
miRNA:   3'- uAUCGGAGGGCACCUUa-GGG--UGCGuc -5'
29011 5' -57.2 NC_006146.1 + 156710 0.66 0.865533
Target:  5'- --cGCCUcCCCGUccaggcuccgGGggUCCagccugGCGCAGa -3'
miRNA:   3'- uauCGGA-GGGCA----------CCuuAGGg-----UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 151192 0.66 0.857964
Target:  5'- -cGGCCUccuccCCCGUGGA--CCagaggACGCAGg -3'
miRNA:   3'- uaUCGGA-----GGGCACCUuaGGg----UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 147991 0.66 0.872894
Target:  5'- cAUGGCC-CUCGUGGGGccuUCCC-UGCAc -3'
miRNA:   3'- -UAUCGGaGGGCACCUU---AGGGuGCGUc -5'
29011 5' -57.2 NC_006146.1 + 144381 0.67 0.817223
Target:  5'- uGUGGCUgucuugCCUggguguGUGGggUCCCAgGCAa -3'
miRNA:   3'- -UAUCGGa-----GGG------CACCuuAGGGUgCGUc -5'
29011 5' -57.2 NC_006146.1 + 142473 0.67 0.817223
Target:  5'- -gGGgCUCCCGUGGAGUgaCCCGgagcCGCc- -3'
miRNA:   3'- uaUCgGAGGGCACCUUA--GGGU----GCGuc -5'
29011 5' -57.2 NC_006146.1 + 137977 0.72 0.543014
Target:  5'- -gGGCCUCCCG-GGGG-CCCG-GCGGg -3'
miRNA:   3'- uaUCGGAGGGCaCCUUaGGGUgCGUC- -5'
29011 5' -57.2 NC_006146.1 + 128035 0.7 0.633797
Target:  5'- --cGCCUCCCaccaGUGGAA-CCUGCGCGu -3'
miRNA:   3'- uauCGGAGGG----CACCUUaGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 127747 0.66 0.877208
Target:  5'- -gAGCCUCCCGgaaaacgucguugGGGAgauugCCCugcUGCAGc -3'
miRNA:   3'- uaUCGGAGGGCa------------CCUUa----GGGu--GCGUC- -5'
29011 5' -57.2 NC_006146.1 + 126442 0.68 0.772337
Target:  5'- --cGCUUCCugCGUGGGAUUCCACGgGa -3'
miRNA:   3'- uauCGGAGG--GCACCUUAGGGUGCgUc -5'
29011 5' -57.2 NC_006146.1 + 125569 0.7 0.633797
Target:  5'- -cGGCCUCCCcc-GAAUCCC-CGCAa -3'
miRNA:   3'- uaUCGGAGGGcacCUUAGGGuGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.