miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29011 5' -57.2 NC_006146.1 + 115522 0.71 0.583039
Target:  5'- cUGGCCUcggugcCCCG-GGcGUCCCGCGCGc -3'
miRNA:   3'- uAUCGGA------GGGCaCCuUAGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 68445 0.67 0.825734
Target:  5'- -cGGCCggCUCcUGGAAagCCUACGCAGa -3'
miRNA:   3'- uaUCGGa-GGGcACCUUa-GGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 117992 0.67 0.817223
Target:  5'- --cGCC-CCCG-GGGGg-CCACGCAGa -3'
miRNA:   3'- uauCGGaGGGCaCCUUagGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 55669 0.67 0.79971
Target:  5'- -gGGCCUCUCagcUGGGcUCCCugGguGa -3'
miRNA:   3'- uaUCGGAGGGc--ACCUuAGGGugCguC- -5'
29011 5' -57.2 NC_006146.1 + 126442 0.68 0.772337
Target:  5'- --cGCUUCCugCGUGGGAUUCCACGgGa -3'
miRNA:   3'- uauCGGAGG--GCACCUUAGGGUGCgUc -5'
29011 5' -57.2 NC_006146.1 + 40760 0.68 0.762953
Target:  5'- uUAGCCacuccccugUCCCGccUGaGggUCuCCACGCGGu -3'
miRNA:   3'- uAUCGG---------AGGGC--AC-CuuAG-GGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 24690 0.68 0.753455
Target:  5'- cAUGGCCgccgcuuacCCCGgaGGAG-CCCAUGCAGc -3'
miRNA:   3'- -UAUCGGa--------GGGCa-CCUUaGGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 8914 0.68 0.743851
Target:  5'- --uGCCUauccaCCGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uauCGGAg----GGCACCUU------AGGGUGCgUC- -5'
29011 5' -57.2 NC_006146.1 + 125569 0.7 0.633797
Target:  5'- -cGGCCUCCCcc-GAAUCCC-CGCAa -3'
miRNA:   3'- uaUCGGAGGGcacCUUAGGGuGCGUc -5'
29011 5' -57.2 NC_006146.1 + 75695 0.67 0.825734
Target:  5'- --cGCCUCCC-UGGAGgagCUgcaGCGCAGg -3'
miRNA:   3'- uauCGGAGGGcACCUUa--GGg--UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 123589 0.67 0.830758
Target:  5'- -aGGCCaucauccaggaggCCCGggaGGAGUCCCGgcUGCAGg -3'
miRNA:   3'- uaUCGGa------------GGGCa--CCUUAGGGU--GCGUC- -5'
29011 5' -57.2 NC_006146.1 + 39403 0.67 0.834071
Target:  5'- -gGGCCcuuUCCCGgucGAUCCCugGCAc -3'
miRNA:   3'- uaUCGG---AGGGCaccUUAGGGugCGUc -5'
29011 5' -57.2 NC_006146.1 + 112801 0.66 0.872894
Target:  5'- --uGCCUCCCGUuGcgcCCCACGUAc -3'
miRNA:   3'- uauCGGAGGGCAcCuuaGGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 40401 0.66 0.872894
Target:  5'- aGUAGCCUCCCGcGGGGgcaaaguagCCACcCGGg -3'
miRNA:   3'- -UAUCGGAGGGCaCCUUag-------GGUGcGUC- -5'
29011 5' -57.2 NC_006146.1 + 117098 0.66 0.865533
Target:  5'- -cAGCCcCCCGcuaUGGAcg-CCGCGCGGg -3'
miRNA:   3'- uaUCGGaGGGC---ACCUuagGGUGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 71774 0.66 0.861016
Target:  5'- -gAGCC-CCUGUGGAGacgCCUgaggccggagggcagGCGCGGg -3'
miRNA:   3'- uaUCGGaGGGCACCUUa--GGG---------------UGCGUC- -5'
29011 5' -57.2 NC_006146.1 + 78801 0.66 0.857964
Target:  5'- -cAGCaauaCUCCC-UGGGAggCCCACGCGu -3'
miRNA:   3'- uaUCG----GAGGGcACCUUa-GGGUGCGUc -5'
29011 5' -57.2 NC_006146.1 + 41763 0.66 0.857964
Target:  5'- -gGGCUUCCCGccGGAggCCCuGCGCc- -3'
miRNA:   3'- uaUCGGAGGGCa-CCUuaGGG-UGCGuc -5'
29011 5' -57.2 NC_006146.1 + 123271 0.66 0.850193
Target:  5'- -cGGCCagagacggCUCGUGGcccuaucggcGAUCCCugGCGGc -3'
miRNA:   3'- uaUCGGa-------GGGCACC----------UUAGGGugCGUC- -5'
29011 5' -57.2 NC_006146.1 + 8968 0.67 0.837356
Target:  5'- -gGGUCUCCCagggugcuauccaccGUGGAGccggucUCCCACGgGGc -3'
miRNA:   3'- uaUCGGAGGG---------------CACCUU------AGGGUGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.