Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29011 | 5' | -57.2 | NC_006146.1 | + | 8968 | 0.67 | 0.837356 |
Target: 5'- -gGGUCUCCCagggugcuauccaccGUGGAGccggucUCCCACGgGGc -3' miRNA: 3'- uaUCGGAGGG---------------CACCUU------AGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 9450 | 0.67 | 0.834071 |
Target: 5'- -cAGCCUaCCCGccccacgcgccuUGGGuUCCCGCGgGGc -3' miRNA: 3'- uaUCGGA-GGGC------------ACCUuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 39403 | 0.67 | 0.834071 |
Target: 5'- -gGGCCcuuUCCCGgucGAUCCCugGCAc -3' miRNA: 3'- uaUCGG---AGGGCaccUUAGGGugCGUc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 123589 | 0.67 | 0.830758 |
Target: 5'- -aGGCCaucauccaggaggCCCGggaGGAGUCCCGgcUGCAGg -3' miRNA: 3'- uaUCGGa------------GGGCa--CCUUAGGGU--GCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 68445 | 0.67 | 0.825734 |
Target: 5'- -cGGCCggCUCcUGGAAagCCUACGCAGa -3' miRNA: 3'- uaUCGGa-GGGcACCUUa-GGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 75695 | 0.67 | 0.825734 |
Target: 5'- --cGCCUCCC-UGGAGgagCUgcaGCGCAGg -3' miRNA: 3'- uauCGGAGGGcACCUUa--GGg--UGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 46385 | 0.67 | 0.820648 |
Target: 5'- -aGGCC-CCCGUcccucgccaGGGccgagaccaggccgaGUCCCGCGUAGa -3' miRNA: 3'- uaUCGGaGGGCA---------CCU---------------UAGGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 117992 | 0.67 | 0.817223 |
Target: 5'- --cGCC-CCCG-GGGGg-CCACGCAGa -3' miRNA: 3'- uauCGGaGGGCaCCUUagGGUGCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 142473 | 0.67 | 0.817223 |
Target: 5'- -gGGgCUCCCGUGGAGUgaCCCGgagcCGCc- -3' miRNA: 3'- uaUCgGAGGGCACCUUA--GGGU----GCGuc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 144381 | 0.67 | 0.817223 |
Target: 5'- uGUGGCUgucuugCCUggguguGUGGggUCCCAgGCAa -3' miRNA: 3'- -UAUCGGa-----GGG------CACCuuAGGGUgCGUc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 167600 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 170395 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 168532 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 169464 | 0.67 | 0.814637 |
Target: 5'- -gGGCCUCCCcugggggccucgggGgcggaggggGGggUCCCGCGgGGc -3' miRNA: 3'- uaUCGGAGGG--------------Ca--------CCuuAGGGUGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 55669 | 0.67 | 0.79971 |
Target: 5'- -gGGCCUCUCagcUGGGcUCCCugGguGa -3' miRNA: 3'- uaUCGGAGGGc--ACCUuAGGGugCguC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 115747 | 0.67 | 0.797029 |
Target: 5'- cUGGCCUCCCGgcggcugacaugGGggUCCCgauaaacAUGgAGg -3' miRNA: 3'- uAUCGGAGGGCa-----------CCuuAGGG-------UGCgUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 56056 | 0.68 | 0.790724 |
Target: 5'- -cAGCCccUCCCGcgGGAaggcGUCCCAC-CGGg -3' miRNA: 3'- uaUCGG--AGGGCa-CCU----UAGGGUGcGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 120497 | 0.68 | 0.790724 |
Target: 5'- ---uCCUgCCCGUGGAggcuauuuAUCCCGcCGCGGu -3' miRNA: 3'- uaucGGA-GGGCACCU--------UAGGGU-GCGUC- -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 85496 | 0.68 | 0.781597 |
Target: 5'- cUGGUCUCCuCGUcGGGAUCCucCACGCc- -3' miRNA: 3'- uAUCGGAGG-GCA-CCUUAGG--GUGCGuc -5' |
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29011 | 5' | -57.2 | NC_006146.1 | + | 126442 | 0.68 | 0.772337 |
Target: 5'- --cGCUUCCugCGUGGGAUUCCACGgGa -3' miRNA: 3'- uauCGGAGG--GCACCUUAGGGUGCgUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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