miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29014 5' -58.6 NC_006146.1 + 167243 0.71 0.566933
Target:  5'- cGCGGCCAGUcCCuggauGUCGGGgaggGCccGGGg -3'
miRNA:   3'- -CGCCGGUCAaGGu----CGGUCCaa--CG--CCC- -5'
29014 5' -58.6 NC_006146.1 + 74253 0.71 0.570857
Target:  5'- cGCGGCCGucUCCccgggcuggccaaagAGCC-GGUUGCGGu -3'
miRNA:   3'- -CGCCGGUcaAGG---------------UCGGuCCAACGCCc -5'
29014 5' -58.6 NC_006146.1 + 15309 0.71 0.576753
Target:  5'- aGgGGCCGGaggCCAGCCccGGUgugccccugGCGGGc -3'
miRNA:   3'- -CgCCGGUCaa-GGUCGGu-CCAa--------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 76255 0.7 0.596498
Target:  5'- aUGGCCAGaaUguGUCAGG-UGCGGGu -3'
miRNA:   3'- cGCCGGUCaaGguCGGUCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 117247 0.7 0.606411
Target:  5'- aGCGGCCGGggCCAGggGGGUcgGCaGGu -3'
miRNA:   3'- -CGCCGGUCaaGGUCggUCCAa-CGcCC- -5'
29014 5' -58.6 NC_006146.1 + 94380 0.7 0.606411
Target:  5'- gGCGcGCgUAGUUCUucuggAGCCAGG-UGUGGGc -3'
miRNA:   3'- -CGC-CG-GUCAAGG-----UCGGUCCaACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 167363 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 168295 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 170158 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 169227 0.7 0.626284
Target:  5'- cGCGG-CGGcgCCGGCCGGGggcUGaGGGg -3'
miRNA:   3'- -CGCCgGUCaaGGUCGGUCCa--ACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 108899 0.69 0.646174
Target:  5'- cGCGGCCAGcgagUCAGCagcgaccgagCAGGUgacGUGGGc -3'
miRNA:   3'- -CGCCGGUCaa--GGUCG----------GUCCAa--CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 122630 0.69 0.656107
Target:  5'- -aGGCCGGggCCcucuuucgcGCCAGGacggcgGCGGGg -3'
miRNA:   3'- cgCCGGUCaaGGu--------CGGUCCaa----CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 161417 0.69 0.656107
Target:  5'- -aGGCCuGUgCCAGgCGGGUguggccccGCGGGa -3'
miRNA:   3'- cgCCGGuCAaGGUCgGUCCAa-------CGCCC- -5'
29014 5' -58.6 NC_006146.1 + 48601 0.69 0.665031
Target:  5'- -aGGCCAgaaggguGUUCCAGUCGucgggugccguGGggGCGGGc -3'
miRNA:   3'- cgCCGGU-------CAAGGUCGGU-----------CCaaCGCCC- -5'
29014 5' -58.6 NC_006146.1 + 51604 0.69 0.666021
Target:  5'- -aGGCCGGUUgcgucgggacagCCGGCUgAGGUUGaGGGa -3'
miRNA:   3'- cgCCGGUCAA------------GGUCGG-UCCAACgCCC- -5'
29014 5' -58.6 NC_006146.1 + 106319 0.69 0.674923
Target:  5'- -gGGCCAGUUCCAGacacugcCCAuaccUGCGGGc -3'
miRNA:   3'- cgCCGGUCAAGGUC-------GGUcca-ACGCCC- -5'
29014 5' -58.6 NC_006146.1 + 67212 0.69 0.67591
Target:  5'- cGUGGCCGGUcgccuggCCGGCCAGGcacaGGa -3'
miRNA:   3'- -CGCCGGUCAa------GGUCGGUCCaacgCCc -5'
29014 5' -58.6 NC_006146.1 + 129351 0.69 0.67591
Target:  5'- aGCGGCCGGUUCucgagCAGCCucAGGaggagcccGCGGa -3'
miRNA:   3'- -CGCCGGUCAAG-----GUCGG--UCCaa------CGCCc -5'
29014 5' -58.6 NC_006146.1 + 34058 0.69 0.67591
Target:  5'- cCGGCCGGgggUCCcguggcacggGGCCGGGgguccCGGGg -3'
miRNA:   3'- cGCCGGUCa--AGG----------UCGGUCCaac--GCCC- -5'
29014 5' -58.6 NC_006146.1 + 56225 0.69 0.685765
Target:  5'- cGCGaGCCG--UCCAG-CGGGUccGCGGGg -3'
miRNA:   3'- -CGC-CGGUcaAGGUCgGUCCAa-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.