miRNA display CGI


Results 21 - 40 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 4560 0.72 0.394888
Target:  5'- aCCUC-CC-CCAGCuauucaccgagcaCCCGGGCCUGGu -3'
miRNA:   3'- gGGAGaGGaGGUCGc------------GGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 33878 0.72 0.398082
Target:  5'- aCCCggcCUCCUCCccgggguGUGCCCGGccuacccccguCCUGGa -3'
miRNA:   3'- -GGGa--GAGGAGGu------CGCGGGCCu----------GGACC- -5'
29015 3' -61.8 NC_006146.1 + 112909 0.72 0.398082
Target:  5'- aCCCgggCCUCCAGCucguCCUGGugcGCCUGGa -3'
miRNA:   3'- -GGGagaGGAGGUCGc---GGGCC---UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 100737 0.72 0.398082
Target:  5'- gCCUCgccggCCaCCAGCGCCCcGGCCaGGa -3'
miRNA:   3'- gGGAGa----GGaGGUCGCGGGcCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 107065 0.71 0.414298
Target:  5'- uUCUCauUCC-CCGGCGCCaCGGcaagACCUGGa -3'
miRNA:   3'- gGGAG--AGGaGGUCGCGG-GCC----UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 154534 0.71 0.421727
Target:  5'- gCCCUCUguguguuUCUCCuGCGUgCCGGACgaGGg -3'
miRNA:   3'- -GGGAGA-------GGAGGuCGCG-GGCCUGgaCC- -5'
29015 3' -61.8 NC_006146.1 + 54630 0.71 0.422557
Target:  5'- gCCUCUCUggUCCGGUGgcucCCCGGGCaUUGGa -3'
miRNA:   3'- gGGAGAGG--AGGUCGC----GGGCCUG-GACC- -5'
29015 3' -61.8 NC_006146.1 + 65714 0.71 0.430914
Target:  5'- cCCCggCUCC-CCGGC-CCCGGuCaCUGGa -3'
miRNA:   3'- -GGGa-GAGGaGGUCGcGGGCCuG-GACC- -5'
29015 3' -61.8 NC_006146.1 + 157336 0.71 0.439367
Target:  5'- cCCCgg-CCUgcuugcgcagcCCGGCGCCCGGcGCCUGc -3'
miRNA:   3'- -GGGagaGGA-----------GGUCGCGGGCC-UGGACc -5'
29015 3' -61.8 NC_006146.1 + 25156 0.71 0.447914
Target:  5'- aCCUCUaCCUCCAGauccuGCCCGG-CCa-- -3'
miRNA:   3'- gGGAGA-GGAGGUCg----CGGGCCuGGacc -5'
29015 3' -61.8 NC_006146.1 + 25602 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 22524 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 19446 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 16368 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 13290 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 118906 0.71 0.456553
Target:  5'- uCUCUCUCgUCCGaaacGCGCCCGGcCCg-- -3'
miRNA:   3'- -GGGAGAGgAGGU----CGCGGGCCuGGacc -5'
29015 3' -61.8 NC_006146.1 + 28680 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 165702 0.7 0.462652
Target:  5'- cCCCUagCUCCcCCAG-GCCCagggaaaacgucucGGGCCUGGc -3'
miRNA:   3'- -GGGA--GAGGaGGUCgCGGG--------------CCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 48747 0.7 0.46528
Target:  5'- uCCUUCUCCUU--GCGCCCGG-CCUc- -3'
miRNA:   3'- -GGGAGAGGAGguCGCGGGCCuGGAcc -5'
29015 3' -61.8 NC_006146.1 + 126227 0.7 0.482095
Target:  5'- aCCggcaucaUCgUCCguuuugggacccaGGCGCCCGGGCUUGGg -3'
miRNA:   3'- gGGag-----AGgAGG-------------UCGCGGGCCUGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.