miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 10227 0.66 0.907461
Target:  5'- cGGCCcUGGUCAuguGcCGGCUCCu-GAAGGc -3'
miRNA:   3'- -CCGGaGCCAGU---C-GUCGAGGcuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 27788 0.68 0.784518
Target:  5'- gGGUCUCaGGUCAcCGGCUCCaGGAAa- -3'
miRNA:   3'- -CCGGAG-CCAGUcGUCGAGGcUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 43351 0.68 0.784518
Target:  5'- -aCCUCGGUCAuCAGCUUuagCGAGAcGGAg -3'
miRNA:   3'- ccGGAGCCAGUcGUCGAG---GCUCU-UCU- -5'
29015 5' -56.9 NC_006146.1 + 161744 0.69 0.775385
Target:  5'- aGCC-CGGgggUGGCGGCugaggUCCGAGggGGc -3'
miRNA:   3'- cCGGaGCCa--GUCGUCG-----AGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 45725 0.69 0.765195
Target:  5'- aGCCUCGGUUGucuuuccucugauGCuGCUCCGGGGGc- -3'
miRNA:   3'- cCGGAGCCAGU-------------CGuCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 124577 0.69 0.737694
Target:  5'- cGGCU--GGUCAGaAGCccggCCGAGAGGAa -3'
miRNA:   3'- -CCGGagCCAGUCgUCGa---GGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 117169 0.7 0.718278
Target:  5'- cGCCcCGGcgCAGCcgcGGCUCCcgGAGAGGAc -3'
miRNA:   3'- cCGGaGCCa-GUCG---UCGAGG--CUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 83174 0.71 0.638437
Target:  5'- gGGCCUUgauuucaaGGUgCAGCAGCUggGAGAGGGu -3'
miRNA:   3'- -CCGGAG--------CCA-GUCGUCGAggCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 108901 0.75 0.444505
Target:  5'- cGGCCagCGaGUCAGCAGCgaCCGAGcAGGu -3'
miRNA:   3'- -CCGGa-GC-CAGUCGUCGa-GGCUCuUCU- -5'
29015 5' -56.9 NC_006146.1 + 113614 0.68 0.793519
Target:  5'- aGGCCUCcugggggaccGUCAGCuugacgguGCUCCG-GggGAu -3'
miRNA:   3'- -CCGGAGc---------CAGUCGu-------CGAGGCuCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 129326 0.68 0.811087
Target:  5'- cGCCUCGGcCAGCcaguaGGCggCCGAGuggcuucuaaaGAGAg -3'
miRNA:   3'- cCGGAGCCaGUCG-----UCGa-GGCUC-----------UUCU- -5'
29015 5' -56.9 NC_006146.1 + 69464 0.66 0.901308
Target:  5'- uGGCgaccgUGGUguGCAGCUuggCCGAGAcGAa -3'
miRNA:   3'- -CCGga---GCCAguCGUCGA---GGCUCUuCU- -5'
29015 5' -56.9 NC_006146.1 + 39835 0.66 0.901308
Target:  5'- cGGCCUCGGccgCA-CAGUgggCCGGcGggGGc -3'
miRNA:   3'- -CCGGAGCCa--GUcGUCGa--GGCU-CuuCU- -5'
29015 5' -56.9 NC_006146.1 + 39670 0.66 0.888327
Target:  5'- uGGCCUUGGaggCGGCGGgCUCCuGGGc-- -3'
miRNA:   3'- -CCGGAGCCa--GUCGUC-GAGGcUCUucu -5'
29015 5' -56.9 NC_006146.1 + 14836 0.67 0.859769
Target:  5'- cGGUCUCGGgcccggGGCcGCgggaggCCGAGggGGc -3'
miRNA:   3'- -CCGGAGCCag----UCGuCGa-----GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 120993 0.67 0.855202
Target:  5'- uGGCCUCGG-CGGC--CUCCGAcuaccucuccuaccuGGAGGa -3'
miRNA:   3'- -CCGGAGCCaGUCGucGAGGCU---------------CUUCU- -5'
29015 5' -56.9 NC_006146.1 + 77283 0.67 0.844271
Target:  5'- cGGCCUcCGGggaggaCAGCAGC-CCcAGGAGc -3'
miRNA:   3'- -CCGGA-GCCa-----GUCGUCGaGGcUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 17765 0.67 0.844271
Target:  5'- aGGCCaCGGUCacacugcgcaagAGCaugagggucccgGGCUCCGAGAGc- -3'
miRNA:   3'- -CCGGaGCCAG------------UCG------------UCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 60467 0.67 0.836239
Target:  5'- aGGCCgCGGggAGCGGUgagaggCCGGGggGc -3'
miRNA:   3'- -CCGGaGCCagUCGUCGa-----GGCUCuuCu -5'
29015 5' -56.9 NC_006146.1 + 150224 0.66 0.907461
Target:  5'- uGGCCagccaggaGGUCAGCAGacuggCCaGGAAGGa -3'
miRNA:   3'- -CCGGag------CCAGUCGUCga---GGcUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.