Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 33201 | 0.67 | 0.844271 |
Target: 5'- gGGCCUcCGGgugCuccuGguGCUCCGGGGc-- -3' miRNA: 3'- -CCGGA-GCCa--Gu---CguCGAGGCUCUucu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 63050 | 0.67 | 0.844271 |
Target: 5'- uGGCCUagagCGGagacgCAGCAuuuucuGCUCuCGGGggGAa -3' miRNA: 3'- -CCGGA----GCCa----GUCGU------CGAG-GCUCuuCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 77283 | 0.67 | 0.844271 |
Target: 5'- cGGCCUcCGGggaggaCAGCAGC-CCcAGGAGc -3' miRNA: 3'- -CCGGA-GCCa-----GUCGUCGaGGcUCUUCu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 60467 | 0.67 | 0.836239 |
Target: 5'- aGGCCgCGGggAGCGGUgagaggCCGGGggGc -3' miRNA: 3'- -CCGGaGCCagUCGUCGa-----GGCUCuuCu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 33326 | 0.68 | 0.819639 |
Target: 5'- gGGCUcCGGggucCGGguGCUCCGGGGc-- -3' miRNA: 3'- -CCGGaGCCa---GUCguCGAGGCUCUucu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 67816 | 0.68 | 0.819639 |
Target: 5'- cGCCUCGGaaguaaaCAGCUCCGuGAGGu -3' miRNA: 3'- cCGGAGCCaguc---GUCGAGGCuCUUCu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 11540 | 0.68 | 0.819639 |
Target: 5'- aGGCCUUGGccaaUCAGCGGUcCCuaAGggGGg -3' miRNA: 3'- -CCGGAGCC----AGUCGUCGaGGc-UCuuCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 22966 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 19889 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 16811 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 13733 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 95670 | 0.68 | 0.811087 |
Target: 5'- cGCCUCGGUCA--GGCUCUuuGAGAu-- -3' miRNA: 3'- cCGGAGCCAGUcgUCGAGG--CUCUucu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 29122 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 26044 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 129326 | 0.68 | 0.811087 |
Target: 5'- cGCCUCGGcCAGCcaguaGGCggCCGAGuggcuucuaaaGAGAg -3' miRNA: 3'- cCGGAGCCaGUCG-----UCGa-GGCUC-----------UUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 166748 | 0.68 | 0.793519 |
Target: 5'- gGGUUUCGGacgggacCAGCAGUggCGAGggGAc -3' miRNA: 3'- -CCGGAGCCa------GUCGUCGagGCUCuuCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 113614 | 0.68 | 0.793519 |
Target: 5'- aGGCCUCcugggggaccGUCAGCuugacgguGCUCCG-GggGAu -3' miRNA: 3'- -CCGGAGc---------CAGUCGu-------CGAGGCuCuuCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 61478 | 0.68 | 0.784518 |
Target: 5'- uGGCCgagUGG-CAGgaucaccagGGCUCCGAGGAGGc -3' miRNA: 3'- -CCGGa--GCCaGUCg--------UCGAGGCUCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 43351 | 0.68 | 0.784518 |
Target: 5'- -aCCUCGGUCAuCAGCUUuagCGAGAcGGAg -3' miRNA: 3'- ccGGAGCCAGUcGUCGAG---GCUCU-UCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 27788 | 0.68 | 0.784518 |
Target: 5'- gGGUCUCaGGUCAcCGGCUCCaGGAAa- -3' miRNA: 3'- -CCGGAG-CCAGUcGUCGAGGcUCUUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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