miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 33201 0.67 0.844271
Target:  5'- gGGCCUcCGGgugCuccuGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGA-GCCa--Gu---CguCGAGGCUCUucu -5'
29015 5' -56.9 NC_006146.1 + 17765 0.67 0.844271
Target:  5'- aGGCCaCGGUCacacugcgcaagAGCaugagggucccgGGCUCCGAGAGc- -3'
miRNA:   3'- -CCGGaGCCAG------------UCG------------UCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 77283 0.67 0.844271
Target:  5'- cGGCCUcCGGggaggaCAGCAGC-CCcAGGAGc -3'
miRNA:   3'- -CCGGA-GCCa-----GUCGUCGaGGcUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 60467 0.67 0.836239
Target:  5'- aGGCCgCGGggAGCGGUgagaggCCGGGggGc -3'
miRNA:   3'- -CCGGaGCCagUCGUCGa-----GGCUCuuCu -5'
29015 5' -56.9 NC_006146.1 + 11540 0.68 0.819639
Target:  5'- aGGCCUUGGccaaUCAGCGGUcCCuaAGggGGg -3'
miRNA:   3'- -CCGGAGCC----AGUCGUCGaGGc-UCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 67816 0.68 0.819639
Target:  5'- cGCCUCGGaaguaaaCAGCUCCGuGAGGu -3'
miRNA:   3'- cCGGAGCCaguc---GUCGAGGCuCUUCu -5'
29015 5' -56.9 NC_006146.1 + 33326 0.68 0.819639
Target:  5'- gGGCUcCGGggucCGGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGaGCCa---GUCguCGAGGCUCUucu -5'
29015 5' -56.9 NC_006146.1 + 16811 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 19889 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 13733 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 22966 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 95670 0.68 0.811087
Target:  5'- cGCCUCGGUCA--GGCUCUuuGAGAu-- -3'
miRNA:   3'- cCGGAGCCAGUcgUCGAGG--CUCUucu -5'
29015 5' -56.9 NC_006146.1 + 129326 0.68 0.811087
Target:  5'- cGCCUCGGcCAGCcaguaGGCggCCGAGuggcuucuaaaGAGAg -3'
miRNA:   3'- cCGGAGCCaGUCG-----UCGa-GGCUC-----------UUCU- -5'
29015 5' -56.9 NC_006146.1 + 29122 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 26044 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 113614 0.68 0.793519
Target:  5'- aGGCCUCcugggggaccGUCAGCuugacgguGCUCCG-GggGAu -3'
miRNA:   3'- -CCGGAGc---------CAGUCGu-------CGAGGCuCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 166748 0.68 0.793519
Target:  5'- gGGUUUCGGacgggacCAGCAGUggCGAGggGAc -3'
miRNA:   3'- -CCGGAGCCa------GUCGUCGagGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 27788 0.68 0.784518
Target:  5'- gGGUCUCaGGUCAcCGGCUCCaGGAAa- -3'
miRNA:   3'- -CCGGAG-CCAGUcGUCGAGGcUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 43351 0.68 0.784518
Target:  5'- -aCCUCGGUCAuCAGCUUuagCGAGAcGGAg -3'
miRNA:   3'- ccGGAGCCAGUcGUCGAG---GCUCU-UCU- -5'
29015 5' -56.9 NC_006146.1 + 61478 0.68 0.784518
Target:  5'- uGGCCgagUGG-CAGgaucaccagGGCUCCGAGGAGGc -3'
miRNA:   3'- -CCGGa--GCCaGUCg--------UCGAGGCUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.