miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2902 5' -57 NC_001493.1 + 29284 1.11 0.00158
Target:  5'- aCGGCCCGGACCAAAAAGGACGCGCUCg -3'
miRNA:   3'- -GCCGGGCCUGGUUUUUCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 61414 0.74 0.430357
Target:  5'- cCGGCCUGGGuCCAuggauccuGGGuaccCGCGCUCa -3'
miRNA:   3'- -GCCGGGCCU-GGUuuu-----UCCu---GCGCGAG- -5'
2902 5' -57 NC_001493.1 + 51795 0.73 0.452083
Target:  5'- aGGUuuGGACCAuucccauccuuccugGAAAGGAgCGCGCg- -3'
miRNA:   3'- gCCGggCCUGGU---------------UUUUCCU-GCGCGag -5'
2902 5' -57 NC_001493.1 + 30967 0.72 0.484804
Target:  5'- cCGGCCCGucgaCAAAcuucgucGGGGugGCGCUCc -3'
miRNA:   3'- -GCCGGGCcug-GUUU-------UUCCugCGCGAG- -5'
2902 5' -57 NC_001493.1 + 32581 0.72 0.534382
Target:  5'- uCGGgCCGGACCGGucgcgaccGGGACGgGCg- -3'
miRNA:   3'- -GCCgGGCCUGGUUuu------UCCUGCgCGag -5'
2902 5' -57 NC_001493.1 + 131203 0.71 0.564376
Target:  5'- uGGUCCGGAgCAAAGAaGaccGCGCGUUCg -3'
miRNA:   3'- gCCGGGCCUgGUUUUUcC---UGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 15648 0.71 0.564376
Target:  5'- uGGUCCGGAgCAAAGAaGaccGCGCGUUCg -3'
miRNA:   3'- gCCGGGCCUgGUUUUUcC---UGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 80786 0.7 0.604998
Target:  5'- aGGCCCGGuACCGugcGAAGaacCGCGCUg -3'
miRNA:   3'- gCCGGGCC-UGGUu--UUUCcu-GCGCGAg -5'
2902 5' -57 NC_001493.1 + 118400 0.7 0.644916
Target:  5'- aCGGCCCucccaccccucacGaaGACgGAcGAGGGCGUGCUCa -3'
miRNA:   3'- -GCCGGG-------------C--CUGgUUuUUCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 2846 0.7 0.644916
Target:  5'- aCGGCCCucccaccccucacGaaGACgGAcGAGGGCGUGCUCa -3'
miRNA:   3'- -GCCGGG-------------C--CUGgUUuUUCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 129076 0.7 0.656167
Target:  5'- gCGGUCCGGAaccguaCAGGucGGGCGCGaaCa -3'
miRNA:   3'- -GCCGGGCCUg-----GUUUuuCCUGCGCgaG- -5'
2902 5' -57 NC_001493.1 + 13521 0.7 0.656167
Target:  5'- gCGGUCCGGAaccguaCAGGucGGGCGCGaaCa -3'
miRNA:   3'- -GCCGGGCCUg-----GUUUuuCCUGCGCgaG- -5'
2902 5' -57 NC_001493.1 + 17617 0.69 0.666376
Target:  5'- gCGGCCCcGACCccGGGAucgcucGGGugGCGCg- -3'
miRNA:   3'- -GCCGGGcCUGG--UUUU------UCCugCGCGag -5'
2902 5' -57 NC_001493.1 + 133171 0.69 0.666376
Target:  5'- gCGGCCCcGACCccGGGAucgcucGGGugGCGCg- -3'
miRNA:   3'- -GCCGGGcCUGG--UUUU------UCCugCGCGag -5'
2902 5' -57 NC_001493.1 + 78867 0.69 0.676557
Target:  5'- aCGGagagCUGGACgAAGAGGGAgGUGCUg -3'
miRNA:   3'- -GCCg---GGCCUGgUUUUUCCUgCGCGAg -5'
2902 5' -57 NC_001493.1 + 92546 0.69 0.696801
Target:  5'- cCGaGCCCGGuuuCCucc-AGGAUGUGUUCa -3'
miRNA:   3'- -GC-CGGGCCu--GGuuuuUCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 44460 0.69 0.696801
Target:  5'- gGGCCugcuCGGGCCGGAGAuGGugGCacgGCUa -3'
miRNA:   3'- gCCGG----GCCUGGUUUUU-CCugCG---CGAg -5'
2902 5' -57 NC_001493.1 + 128885 0.69 0.706845
Target:  5'- gGGCCgugCGGugCucggcGGGACGUGUUCg -3'
miRNA:   3'- gCCGG---GCCugGuuuu-UCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 13331 0.69 0.706845
Target:  5'- gGGCCgugCGGugCucggcGGGACGUGUUCg -3'
miRNA:   3'- gCCGG---GCCugGuuuu-UCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 115885 0.68 0.716827
Target:  5'- cCGGCCCGauaaucCCGAGAAuGGAC-CGCUUg -3'
miRNA:   3'- -GCCGGGCcu----GGUUUUU-CCUGcGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.