miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2902 5' -57 NC_001493.1 + 21045 0.67 0.793296
Target:  5'- gGGCCCacACgAGAGAGGAucuucuugaagaCGUGCUCg -3'
miRNA:   3'- gCCGGGccUGgUUUUUCCU------------GCGCGAG- -5'
2902 5' -57 NC_001493.1 + 108812 0.67 0.774872
Target:  5'- gGGCCUGGACCcgagauucgauGGAGGGuuGCGUa- -3'
miRNA:   3'- gCCGGGCCUGGu----------UUUUCCugCGCGag -5'
2902 5' -57 NC_001493.1 + 114137 0.67 0.774872
Target:  5'- ---aCgGGACCAucuGGGAGGACGCGC-Ca -3'
miRNA:   3'- gccgGgCCUGGU---UUUUCCUGCGCGaG- -5'
2902 5' -57 NC_001493.1 + 87006 0.67 0.78323
Target:  5'- uGGCgugacgaCCGGACCcgac-GGugGCGCUg -3'
miRNA:   3'- gCCG-------GGCCUGGuuuuuCCugCGCGAg -5'
2902 5' -57 NC_001493.1 + 11052 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 11094 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 89029 0.67 0.784152
Target:  5'- aGGCgCGGAgucaCCAcgcgcguacaugGGGAGGAcgcCGCGCUCc -3'
miRNA:   3'- gCCGgGCCU----GGU------------UUUUCCU---GCGCGAG- -5'
2902 5' -57 NC_001493.1 + 126607 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 126649 0.67 0.784152
Target:  5'- gGGCUCGacGACCcgu-GGGACGgaCGCUCa -3'
miRNA:   3'- gCCGGGC--CUGGuuuuUCCUGC--GCGAG- -5'
2902 5' -57 NC_001493.1 + 31345 0.68 0.765463
Target:  5'- --aCCUGGGCCGAGAGguGGGCGCGggCg -3'
miRNA:   3'- gccGGGCCUGGUUUUU--CCUGCGCgaG- -5'
2902 5' -57 NC_001493.1 + 29138 0.68 0.744361
Target:  5'- uGGUCCGGGCCGugcccc-CGCGUUCg -3'
miRNA:   3'- gCCGGGCCUGGUuuuuccuGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 115885 0.68 0.716827
Target:  5'- cCGGCCCGauaaucCCGAGAAuGGAC-CGCUUg -3'
miRNA:   3'- -GCCGGGCcu----GGUUUUU-CCUGcGCGAG- -5'
2902 5' -57 NC_001493.1 + 32581 0.72 0.534382
Target:  5'- uCGGgCCGGACCGGucgcgaccGGGACGgGCg- -3'
miRNA:   3'- -GCCgGGCCUGGUUuu------UCCUGCgCGag -5'
2902 5' -57 NC_001493.1 + 80786 0.7 0.604998
Target:  5'- aGGCCCGGuACCGugcGAAGaacCGCGCUg -3'
miRNA:   3'- gCCGGGCC-UGGUu--UUUCcu-GCGCGAg -5'
2902 5' -57 NC_001493.1 + 17617 0.69 0.666376
Target:  5'- gCGGCCCcGACCccGGGAucgcucGGGugGCGCg- -3'
miRNA:   3'- -GCCGGGcCUGG--UUUU------UCCugCGCGag -5'
2902 5' -57 NC_001493.1 + 133171 0.69 0.666376
Target:  5'- gCGGCCCcGACCccGGGAucgcucGGGugGCGCg- -3'
miRNA:   3'- -GCCGGGcCUGG--UUUU------UCCugCGCGag -5'
2902 5' -57 NC_001493.1 + 92546 0.69 0.696801
Target:  5'- cCGaGCCCGGuuuCCucc-AGGAUGUGUUCa -3'
miRNA:   3'- -GC-CGGGCCu--GGuuuuUCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 13331 0.69 0.706845
Target:  5'- gGGCCgugCGGugCucggcGGGACGUGUUCg -3'
miRNA:   3'- gCCGG---GCCugGuuuu-UCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 128885 0.69 0.706845
Target:  5'- gGGCCgugCGGugCucggcGGGACGUGUUCg -3'
miRNA:   3'- gCCGG---GCCugGuuuu-UCCUGCGCGAG- -5'
2902 5' -57 NC_001493.1 + 331 0.68 0.716827
Target:  5'- cCGGCCCGauaaucCCGAGAAuGGAC-CGCUUg -3'
miRNA:   3'- -GCCGGGCcu----GGUUUUU-CCUGcGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.